Paper · 2023 · Antioxidants

RNA-Seq Analysis Demystify the Pathways of UV-A Supplementation in Different Photoperiods Integrated with Blue and Red Light on Morphology and Phytochemical Profile of Kale

Haozhao Jiang; Yamin Li; Jiehui Tan; et al.

11
claims
30
verbatim quotes
5
citations
3
research areas
✓
Open access · cc-by

Abstract

As an indispensable element in the morphology and phytochemical profile of plants, UV-A has proved to help promote the growth and quality of kale. In this study, UV-A supplementation in different photoperiods (light period supplemental UVA = LS, dark period supplemental UVA = DS, and light-dark period supplemental UVA = LDS) contributed to yielding greater biomass production (fresh weight, dry weight, and plant moisture content), thus improving morphology (plant height, stem diameter, etc.) and promoting higher phytochemicals content (flavonoids, vitamin c, etc.), especially glucosinolates. To fathom its mechanisms, this study, using RNA-seq, verified that UV-A supplementation treatments signally generated related DEGs of plant hormone signal pathway, circadian rhythm plant pathway, glucosinolate pathway, etc. Moreover, 2047 DEGs were obtained in WGCNA, illustrating the correlations between genes, treatments, and pathways. Additionally, DS remarkedly up-regulated related DEGs of the key pathways and ultimately contributed to promoting the stem diameter, plant height, etc., thus increasing the pigment, biomass, vitamin c, etc., enhancing the antioxidant capacity, and most importantly, boosting the accumulations of glucosinolates in kale. In short, this study displayed new insights into UV-A supplementation affected the pathways related to the morphology and phytochemical profile of kale in plant factories.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 11

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

UV-A supplementation increased kale fresh weight, dry weight and moisture content.

Treatment
UV-A supplementatione0
Outcome
fresh weight, dry weight, and plant moisture contente0
Direction
greatere0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica oleracea var. viridis
Brassica oleracea var. viridis · TaxonAnn Perry · Public domain · Wikimedia Commons ↗

Verbatim

e0

“UV-A supplementation in different photoperiods (light period supplemental UVA = LS, dark period supplemental UVA = DS, and light-dark period supplemental UVA = LDS) contributed to yielding greater biomass production (fresh weight, dry weight, and plant moisture content)”

✓ located verbatim in the source · abstract, characters 162–432 · show in text ↑
t0

“Kale”

✓ located verbatim in the source · title, characters 168–172 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

UV-A supplementation improved kale height and stem diameter.

Treatment
UV-A supplementatione1
Outcome
plant height, stem diametere0
Direction
improvinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica oleracea var. viridis
Brassica oleracea var. viridis · TaxonAnn Perry · Public domain · Wikimedia Commons ↗

Verbatim

e0

“thus improving morphology (plant height, stem diameter, etc.)”

✓ located verbatim in the source · abstract, characters 434–495 · show in text ↑
t0

“Kale”

✓ located verbatim in the source · title, characters 168–172 · show in text ↑
e1

“UV-A supplementation in different photoperiods”

✓ located verbatim in the source · abstract, characters 162–208 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

UV-A supplementation increased flavonoid and vitamin c content.

Treatment
UV-A supplementatione1
Outcome
flavonoids, vitamin ce0
Direction
highere0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica oleracea var. viridis
Brassica oleracea var. viridis · TaxonAnn Perry · Public domain · Wikimedia Commons ↗

Verbatim

e0

“promoting higher phytochemicals content (flavonoids, vitamin c, etc.), especially glucosinolates”

✓ located verbatim in the source · abstract, characters 500–596 · show in text ↑
e1

“UV-A supplementation in different photoperiods”

✓ located verbatim in the source · abstract, characters 162–208 · show in text ↑
t0

“Kale”

✓ located verbatim in the source · title, characters 168–172 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

UV-A supplementation particularly increased glucosinolates.

Treatment
UV-A supplementatione1
Outcome
glucosinolatese0
Direction
highere0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica oleracea var. viridis
Brassica oleracea var. viridis · TaxonAnn Perry · Public domain · Wikimedia Commons ↗

Verbatim

e0

“promoting higher phytochemicals content (flavonoids, vitamin c, etc.), especially glucosinolates”

✓ located verbatim in the source · abstract, characters 500–596 · show in text ↑
e1

“UV-A supplementation in different photoperiods”

✓ located verbatim in the source · abstract, characters 162–208 · show in text ↑
t0

“Kale”

✓ located verbatim in the source · title, characters 168–172 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

UV-A supplementation generated differentially expressed genes in hormone, circadian and glucosinolate pathways.

Treatment
UV-A supplementation treatmentse0
Outcome
DEGs of plant hormone signal pathway, circadian rhythm plant pathway, glucosinolate pathwaye0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica oleracea var. viridis
Brassica oleracea var. viridis · TaxonAnn Perry · Public domain · Wikimedia Commons ↗

Verbatim

e0

“UV-A supplementation treatments signally generated related DEGs of plant hormone signal pathway, circadian rhythm plant pathway, glucosinolate pathway, etc.”

✓ located verbatim in the source · abstract, characters 665–821 · show in text ↑
t0

“Kale”

✓ located verbatim in the source · title, characters 168–172 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

WGCNA obtained 2047 differentially expressed genes.

Outcome
DEGse0
Value
2047e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica oleracea var. viridis
Brassica oleracea var. viridis · TaxonAnn Perry · Public domain · Wikimedia Commons ↗

Verbatim

e0

“2047 DEGs were obtained in WGCNA”

✓ located verbatim in the source · abstract, characters 832–864 · show in text ↑
t0

“Kale”

✓ located verbatim in the source · title, characters 168–172 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Dark period UV-A upregulated differentially expressed genes in key pathways.

Treatment
dark period supplemental UVAe1
Outcome
DEGs of the key pathwayse0
Direction
up-regulatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica oleracea var. viridis
Brassica oleracea var. viridis · TaxonAnn Perry · Public domain · Wikimedia Commons ↗

Verbatim

e0

“DS remarkedly up-regulated related DEGs of the key pathways”

✓ located verbatim in the source · abstract, characters 951–1010 · show in text ↑
e1

“dark period supplemental UVA = DS”

✓ located verbatim in the source · abstract, characters 246–279 · show in text ↑
t0

“Kale”

✓ located verbatim in the source · title, characters 168–172 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Dark period UV-A increased kale stem diameter and plant height.

Treatment
dark period supplemental UVAe1
Outcome
stem diameter, plant heighte0
Direction
promotinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica oleracea var. viridis
Brassica oleracea var. viridis · TaxonAnn Perry · Public domain · Wikimedia Commons ↗

Verbatim

e0

“DS remarkedly up-regulated related DEGs of the key pathways and ultimately contributed to promoting the stem diameter, plant height, etc.”

✓ located verbatim in the source · abstract, characters 951–1088 · show in text ↑
e1

“dark period supplemental UVA = DS”

✓ located verbatim in the source · abstract, characters 246–279 · show in text ↑
t0

“Kale”

✓ located verbatim in the source · title, characters 168–172 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Dark period UV-A increased pigment, biomass and vitamin c.

Treatment
dark period supplemental UVAe1
Outcome
pigment, biomass, vitamin ce0
Direction
increasinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica oleracea var. viridis
Brassica oleracea var. viridis · TaxonAnn Perry · Public domain · Wikimedia Commons ↗

Verbatim

e0

“thus increasing the pigment, biomass, vitamin c, etc.”

✓ located verbatim in the source · abstract, characters 1090–1143 · show in text ↑
e1

“dark period supplemental UVA = DS”

✓ located verbatim in the source · abstract, characters 246–279 · show in text ↑
t0

“Kale”

✓ located verbatim in the source · title, characters 168–172 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Dark period UV-A enhanced antioxidant capacity.

Treatment
dark period supplemental UVAe1
Outcome
antioxidant capacitye0
Direction
enhancinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica oleracea var. viridis
Brassica oleracea var. viridis · TaxonAnn Perry · Public domain · Wikimedia Commons ↗

Verbatim

e0

“enhancing the antioxidant capacity”

✓ located verbatim in the source · abstract, characters 1145–1179 · show in text ↑
e1

“dark period supplemental UVA = DS”

✓ located verbatim in the source · abstract, characters 246–279 · show in text ↑
t0

“Kale”

✓ located verbatim in the source · title, characters 168–172 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Dark period UV-A boosted glucosinolate accumulation.

Treatment
dark period supplemental UVAe1
Outcome
accumulations of glucosinolatese0
Direction
boostinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica oleracea var. viridis
Brassica oleracea var. viridis · TaxonAnn Perry · Public domain · Wikimedia Commons ↗

Verbatim

e0

“boosting the accumulations of glucosinolates in kale”

✓ located verbatim in the source · abstract, characters 1203–1255 · show in text ↑
e1

“dark period supplemental UVA = DS”

✓ located verbatim in the source · abstract, characters 246–279 · show in text ↑
t0

“Kale”

✓ located verbatim in the source · title, characters 168–172 · show in text ↑

uv · growth · Brassica oleracea (wild cabbage)Results differ

17 papers: 10 positive, 7 negative or no effect

9 papers in the same direction as this paper · 6 in the opposite direction · 1 reporting no difference from an alternative

  1. positive
  2. negative
  3. no effect

13 papers more in this group

See all 17 papers →

uv · molecular: expression · Brassica oleracea (wild cabbage)Positive and negative results

6 papers: 5 positive, 1 negative or no effect

4 papers in the same direction as this paper · 1 reporting no difference from an alternative

  1. positive
  2. no effect
  3. positive

2 papers more in this group

See all 6 papers →

light · physiology: pigments · Brassica oleracea (wild cabbage)Positive and negative results

32 papers: 29 positive, 3 negative or no effect

28 papers in the same direction as this paper · 3 in the opposite direction

  1. no effect
  2. negative
  3. negative

28 papers more in this group

See all 32 papers →

light · quality: phytochemicals · Brassica oleracea (wild cabbage)Positive and negative results

34 papers: 31 positive, 3 negative or no effect

30 papers in the same direction as this paper · 3 in the opposite direction

  1. no effect
  2. negative
  3. negative

30 papers more in this group

See all 34 papers →

light · growth · Brassica oleracea (wild cabbage)Positive and negative results

54 papers: 40 positive, 14 negative or no effect

39 papers in the same direction as this paper · 13 in the opposite direction · 1 reporting no difference from an alternative

  1. positive
  2. negative
  3. no effect

50 papers more in this group

See all 54 papers →

uv · quality: grain · Brassica oleracea (wild cabbage)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

light · molecular: expression · Brassica oleracea (wild cabbage)Results agree

5 papers: 5 positive, 0 negative or no effect

4 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

1 paper more in this group

See all 5 papers →

uv · physiology: pigments · Brassica oleracea (wild cabbage)Results agree

11 papers: 11 positive, 0 negative or no effect

10 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

7 papers more in this group

See all 11 papers →

8 of 9 groups shown: named compounds and organisms first, then groups whose results differ (checked claim by claim), then those with positive and negative results, then the smaller groups.

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.