Paper · 2026 · Industrial Crops and Products

Mycorrhizal fungi–helper bacteria synergy improves rice chilling tolerance through coordinated physiological, transcriptomic and metabolomic reprogramming

Feng Shi; Xue He; Bo Zhang; et al.

11
claims
24
verbatim quotes
0
citations
3
research areas
✓
Open access · cc-by-nc

Abstract

Low-temperature stress severely limits rice seedling establishment, threatening yield in high-latitude regions. Beneficial microbial symbioses can improve chilling tolerance, yet the mechanisms of arbuscular mycorrhizal–microbial addition (AMB) remain unclear. Here, we investigated the effects of AMB, composed of Rhizophagus intraradices , Agrobacterium rhizogenes , and Bacillus subtilis , on rice seedlings under chilling stress using integrated physiological, transcriptomic, and metabolomic analyses, providing mechanistic insights relevant to plant stress biology and crop resilience. AMB successfully established root symbiosis and alleviated chilling-induced growth inhibition, increasing root and shoot length by 15–25% compared with non-inoculated plants. Physiological measurements showed lower malondialdehyde, higher antioxidant enzyme activities, osmoprotectant levels, ATP content, and photosynthetic performance in AMB plants. Transcriptomic analysis revealed that AMB redirected chilling responses from broad stress and defense related pathways toward structural maintenance, cell wall stabilization, and regulated cellular adjustment. Metabolomic profiling indicated enhanced accumulation of lipid- and membrane-associated metabolites and osmolytes. Integrated analyses demonstrated coordinated regulation of phenylpropanoid, α-linolenic acid, flavonoid, and proline biosynthesis, as well as abscisic acid signaling. These results suggest that AMB enhances rice chilling tolerance by stabilizing physiological homeostasis and modulating cold-responsive regulatory networks, providing a mechanistic framework for microbial strategies to improve rice resilience to low-temperature stress.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by-nc. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 11

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

AMB successfully established root symbiosis in rice.

Treatment
AMBe1
Outcome
root symbiosise1
Direction
successfully establishede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice chilling tolerance”

✓ located verbatim in the source · title, characters 51–74 · show in text ↑
e1

“AMB successfully established root symbiosis”

✓ located verbatim in the source · abstract, characters 592–635 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

AMB increased root and shoot length of chilled rice by 15–25% compared with non-inoculated plants.

Treatment
AMBe2
Outcome
root and shoot lengthe2
Direction
increasinge2
Value
15–25%e2
Comparator
non-inoculated plantse2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice chilling tolerance”

✓ located verbatim in the source · title, characters 51–74 · show in text ↑
e2

“AMB successfully established root symbiosis and alleviated chilling-induced growth inhibition, increasing root and shoot length by 15–25% compared with non-inoculated plants”

✓ located verbatim in the source · abstract, characters 592–765 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

AMB alleviated chilling-induced growth inhibition in rice.

Treatment
AMBe2
Outcome
chilling-induced growth inhibitione2
Direction
alleviatede2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice chilling tolerance”

✓ located verbatim in the source · title, characters 51–74 · show in text ↑
e2

“AMB successfully established root symbiosis and alleviated chilling-induced growth inhibition, increasing root and shoot length by 15–25% compared with non-inoculated plants”

✓ located verbatim in the source · abstract, characters 592–765 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

AMB lowered malondialdehyde in chilled rice plants.

Treatment
AMBe3
Outcome
malondialdehydee3
Direction
lowere3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice chilling tolerance”

✓ located verbatim in the source · title, characters 51–74 · show in text ↑
e3

“Physiological measurements showed lower malondialdehyde, higher antioxidant enzyme activities, osmoprotectant levels, ATP content, and photosynthetic performance in AMB plants”

✓ located verbatim in the source · abstract, characters 767–942 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

AMB raised antioxidant enzyme activities, osmoprotectant levels and ATP content in chilled rice plants.

Treatment
AMBe3
Outcome
antioxidant enzyme activities, osmoprotectant levels, ATP contente3
Direction
highere3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice chilling tolerance”

✓ located verbatim in the source · title, characters 51–74 · show in text ↑
e3

“Physiological measurements showed lower malondialdehyde, higher antioxidant enzyme activities, osmoprotectant levels, ATP content, and photosynthetic performance in AMB plants”

✓ located verbatim in the source · abstract, characters 767–942 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

AMB raised photosynthetic performance in chilled rice plants.

Treatment
AMBe3
Outcome
photosynthetic performancee3
Direction
highere3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice chilling tolerance”

✓ located verbatim in the source · title, characters 51–74 · show in text ↑
e3

“Physiological measurements showed lower malondialdehyde, higher antioxidant enzyme activities, osmoprotectant levels, ATP content, and photosynthetic performance in AMB plants”

✓ located verbatim in the source · abstract, characters 767–942 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

AMB redirected transcriptomic chilling responses away from broad stress and defense pathways toward structural maintenance and cell wall stabilization.

Treatment
AMBe4
Outcome
chilling responsese4
Direction
redirectede4
Comparator
broad stress and defense related pathwayse4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice chilling tolerance”

✓ located verbatim in the source · title, characters 51–74 · show in text ↑
e4

“AMB redirected chilling responses from broad stress and defense related pathways toward structural maintenance, cell wall stabilization, and regulated cellular adjustment”

✓ located verbatim in the source · abstract, characters 982–1152 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

AMB enhanced accumulation of lipid- and membrane-associated metabolites and osmolytes in rice.

Treatment
AMBe2
Outcome
lipid- and membrane-associated metabolites and osmolytese5
Direction
enhanced accumulatione5

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice chilling tolerance”

✓ located verbatim in the source · title, characters 51–74 · show in text ↑
e2

“AMB successfully established root symbiosis and alleviated chilling-induced growth inhibition, increasing root and shoot length by 15–25% compared with non-inoculated plants”

✓ located verbatim in the source · abstract, characters 592–765 · show in text ↑
e5

“Metabolomic profiling indicated enhanced accumulation of lipid- and membrane-associated metabolites and osmolytes”

✓ located verbatim in the source · abstract, characters 1154–1267 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

AMB coordinately regulated phenylpropanoid, α-linolenic acid and flavonoid biosynthesis in rice.

Treatment
AMBe2
Outcome
phenylpropanoid, α-linolenic acid, flavonoide6
Direction
coordinated regulatione6

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice chilling tolerance”

✓ located verbatim in the source · title, characters 51–74 · show in text ↑
e2

“AMB successfully established root symbiosis and alleviated chilling-induced growth inhibition, increasing root and shoot length by 15–25% compared with non-inoculated plants”

✓ located verbatim in the source · abstract, characters 592–765 · show in text ↑
e6

“Integrated analyses demonstrated coordinated regulation of phenylpropanoid, α-linolenic acid, flavonoid, and proline biosynthesis, as well as abscisic acid signaling”

✓ located verbatim in the source · abstract, characters 1269–1434 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

AMB coordinately regulated proline biosynthesis and abscisic acid signaling in rice.

Treatment
AMBe2
Outcome
proline biosynthesis, as well as abscisic acid signalinge6
Direction
coordinated regulatione6

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice chilling tolerance”

✓ located verbatim in the source · title, characters 51–74 · show in text ↑
e2

“AMB successfully established root symbiosis and alleviated chilling-induced growth inhibition, increasing root and shoot length by 15–25% compared with non-inoculated plants”

✓ located verbatim in the source · abstract, characters 592–765 · show in text ↑
e6

“Integrated analyses demonstrated coordinated regulation of phenylpropanoid, α-linolenic acid, flavonoid, and proline biosynthesis, as well as abscisic acid signaling”

✓ located verbatim in the source · abstract, characters 1269–1434 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

AMB enhances rice chilling tolerance by stabilizing physiological homeostasis and modulating cold-responsive regulatory networks.

Treatment
AMBe7
Outcome
chilling tolerancee7
Qualifier
stabilizing physiological homeostasis and modulating cold-responsive regulatory networkse7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e7

“These results suggest that AMB enhances rice chilling tolerance by stabilizing physiological homeostasis and modulating cold-responsive regulatory networks”

✓ located verbatim in the source · abstract, characters 1436–1591 · show in text ↑

mycorrhiza · disease · Oryza sativa (rice)Positive and negative results

20 papers: 17 positive, 3 negative or no effect

16 papers in the same direction as this paper · 3 in the opposite direction

  1. negative
  2. no effect
  3. negative

16 papers more in this group

See all 20 papers →

mycorrhiza · growth · Oryza sativa (rice)Positive and negative results

41 papers: 37 positive, 4 negative or no effect

36 papers in the same direction as this paper · 4 in the opposite direction

  1. negative
  2. negative
  3. negative

37 papers more in this group

See all 41 papers →

mycorrhiza · physiology: oxidative · Oryza sativa (rice)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

mycorrhiza · physiology: osmolytes · Oryza sativa (rice)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

mycorrhiza · physiology: photosynthesis · Oryza sativa (rice)Results agree

3 papers: 3 positive, 0 negative or no effect

2 papers in the same direction as this paper

  1. positive
  2. positive
See all 3 papers →

mycorrhiza · soil: biology · Oryza sativa (rice)Results agree

5 papers: 5 positive, 0 negative or no effect

4 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

1 paper more in this group

See all 5 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.