Paper · 2023 · Nature Communications

Manipulating microRNA miR408 enhances both biomass yield and saccharification efficiency in poplar

Yayu Guo; Shufang Wang; Keji Yu; et al.

9
claims
15
verbatim quotes
68
citations
4
research areas
✓
Open access · cc-by

Abstract

The conversion of lignocellulosic feedstocks to fermentable sugar for biofuel production is inefficient, and most strategies to enhance efficiency directly target lignin biosynthesis, with associated negative growth impacts. Here we demonstrate, for both laboratory- and field-grown plants, that expression of Pag-miR408 in poplar (Populus alba × P. glandulosa) significantly enhances saccharification, with no requirement for acid-pretreatment, while promoting plant growth. The overexpression plants show increased accessibility of cell walls to cellulase and scaffoldin cellulose-binding modules. Conversely, Pag-miR408 loss-of-function poplar shows decreased cell wall accessibility. Overexpression of Pag-miR408 targets three Pag-LACCASES, delays lignification, and modestly reduces lignin content, S/G ratio and degree of lignin polymerization. Meanwhile, the LACCASE loss of function mutants exhibit significantly increased growth and cell wall accessibility in xylem. Our study shows how Pag-miR408 regulates lignification and secondary growth, and suggest an effective approach towards enhancing biomass yield and saccharification efficiency in a major bioenergy crop.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 9

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Pag-miR408 expression significantly enhanced saccharification in laboratory and field plants without acid pretreatment.

Taxon
poplarPopuluse0
Treatment
expression of Pag-miR408e0
Gene
Pag-miR408e0
Outcome
saccharificatione0
Direction
enhancese0
Qualifier
no requirement for acid-pretreatmente0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Populus
Populus · Taxon · picture of the genus (one of its species)Christian Fischer · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“expression of Pag-miR408 in poplar (Populus alba × P. glandulosa) significantly enhances saccharification, with no requirement for acid-pretreatment”

✓ located verbatim in the source · abstract, characters 296–444 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Pag-miR408 expression promoted plant growth.

Taxon
poplarPopuluse0
Treatment
expression of Pag-miR408e0
Gene
Pag-miR408e0
Outcome
plant growthe0
Direction
promotinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Populus
Populus · Taxon · picture of the genus (one of its species)Christian Fischer · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“expression of Pag-miR408 in poplar (Populus alba × P. glandulosa) significantly enhances saccharification, with no requirement for acid-pretreatment, while promoting plant growth”

✓ located verbatim in the source · abstract, characters 296–474 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Pag-miR408 overexpression increased cell-wall accessibility to cellulase and scaffoldin binding modules.

Taxon
poplarPopulust0
Treatment
overexpressione0
Outcome
accessibility of cell walls to cellulase and scaffoldin cellulose-binding modulese0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Populus
Populus · Taxon · picture of the genus (one of its species)Christian Fischer · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“poplar”

✓ located verbatim in the source · title, characters 92–98 · show in text ↑
e0

“The overexpression plants show increased accessibility of cell walls to cellulase and scaffoldin cellulose-binding modules”

✓ located verbatim in the source · abstract, characters 476–598 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Pag-miR408 loss of function decreased cell-wall accessibility.

Taxon
poplarPopuluse0
Treatment
Pag-miR408 loss-of-functione0
Gene
Pag-miR408e0
Outcome
cell wall accessibilitye0
Direction
decreasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Populus
Populus · Taxon · picture of the genus (one of its species)Christian Fischer · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Pag-miR408 loss-of-function poplar shows decreased cell wall accessibility”

✓ located verbatim in the source · abstract, characters 612–686 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Pag-miR408 overexpression targeted three Pag-LACCASES.

Taxon
poplarPopulust0
Gene
Pag-miR408e0
Outcome
targets three Pag-LACCASESe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Populus
Populus · Taxon · picture of the genus (one of its species)Christian Fischer · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“poplar”

✓ located verbatim in the source · title, characters 92–98 · show in text ↑
e0

“Overexpression of Pag-miR408 targets three Pag-LACCASES”

✓ located verbatim in the source · abstract, characters 688–743 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Pag-miR408 overexpression delayed lignification.

Taxon
poplarPopulust0
Treatment
Overexpression of Pag-miR408e0
Gene
Pag-miR408e0
Outcome
lignificatione0
Direction
delayse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Populus
Populus · Taxon · picture of the genus (one of its species)Christian Fischer · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“poplar”

✓ located verbatim in the source · title, characters 92–98 · show in text ↑
e0

“Overexpression of Pag-miR408 targets three Pag-LACCASES, delays lignification”

✓ located verbatim in the source · abstract, characters 688–765 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Pag-miR408 overexpression modestly reduced lignin content, S/G ratio, and lignin polymerization degree.

Taxon
poplarPopulust0
Treatment
Overexpression of Pag-miR408e0
Gene
Pag-miR408e0
Outcome
lignin content, S/G ratio and degree of lignin polymerizatione0
Direction
reducese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Populus
Populus · Taxon · picture of the genus (one of its species)Christian Fischer · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“poplar”

✓ located verbatim in the source · title, characters 92–98 · show in text ↑
e0

“Overexpression of Pag-miR408 targets three Pag-LACCASES, delays lignification, and modestly reduces lignin content, S/G ratio and degree of lignin polymerization”

✓ located verbatim in the source · abstract, characters 688–849 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

LACCASE loss-of-function mutants had significantly increased growth.

Taxon
poplarPopulust0
Treatment
LACCASE loss of functione0
Gene
LACCASEe0
Outcome
growthe0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Populus
Populus · Taxon · picture of the genus (one of its species)Christian Fischer · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“poplar”

✓ located verbatim in the source · title, characters 92–98 · show in text ↑
e0

“LACCASE loss of function mutants exhibit significantly increased growth and cell wall accessibility in xylem”

✓ located verbatim in the source · abstract, characters 866–974 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

LACCASE loss-of-function mutants had significantly increased xylem cell-wall accessibility.

Taxon
poplarPopulust0
Organ / stage
xyleme0
Treatment
LACCASE loss of functione0
Gene
LACCASEe0
Outcome
cell wall accessibilitye0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Populus
Populus · Taxon · picture of the genus (one of its species)Christian Fischer · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“poplar”

✓ located verbatim in the source · title, characters 92–98 · show in text ↑
e0

“LACCASE loss of function mutants exhibit significantly increased growth and cell wall accessibility in xylem”

✓ located verbatim in the source · abstract, characters 866–974 · show in text ↑

transgenic · growth · Populus (poplar)Positive and negative results

5 papers: 2 positive, 3 negative or no effect

1 paper in the same direction as this paper · 3 in the opposite direction

  1. negative
  2. negative
  3. no effect

1 paper more in this group

See all 5 papers →

loss of function · cytology · Populus (poplar)Results agree

2 papers: 0 positive, 2 negative or no effect

1 paper in the same direction as this paper

  1. negative
See all 2 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.