Paper · 2021 · Journal of Experimental Botany

Rice recruits Sphingomonas strain HJY-rfp via root exudate regulation to increase chlorpyrifos tolerance and boost residual catabolism

Fayun Feng; Honglin Zhan; Qun Wan; et al.

12
claims
21
verbatim quotes
26
citations
3
research areas
—
Not open access

Abstract

Inoculation with pollution-degrading endophytes boosts the catabolism of residual contaminants and promotes the pollution adaptation of host plants. We investigated the interaction pattern between Sphingomonas strain HJY-rfp, a chlorpyrifos-degrading endophytic bacterium, and rice (Oryza sativa) under pesticide stress using hydroponic cultivation. We observed a notable trend of endophytic root colonization in rice plants treated with 10 mg l-1 chlorpyrifos solution, and after 24 h the migration of HJY-rfp enhanced the chlorpyrifos degradation rate in leaves and stems by 53.36% and 40.81%, respectively. Critically, the rice root exudate profile (organic acids and amino acids) changed under chlorpyrifos stress, and variations in the contents of several components affected the chemotactic behaviour of HJY-rfp. HJY-rfp colonization dramatically activated defensive enzymes, which enabled efficient scavenging of reactive oxygen species, and led to 9.8%, 22.5%, and 41.9% increases in shoot length, fresh weight, and accumulation of total chlorophyll, respectively, in rice suffering from oxidative damage by chlorpyrifos. Endophytic colonization caused up-regulation of detoxification genes that have shown a significant positive correlation with chlorpyrifos degradation in vivo. Collectively, our results demonstrate that agrochemical stress causes plants to actively recruit specific symbiotic microbes to detoxify contaminants and survive better under pollution conditions.

Abstract from the paper’s OpenAlex record, shown for indexing and research. Copyright remains with the authors or the publisher. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 12

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Root endophytic colonization occurred in chlorpyrifos-treated rice.

Treatment
10 mg l-1 chlorpyrifos solutione0
Interactor
Sphingomonas strain HJY-rfpe1symbiont
Outcome
endophytic root colonizatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“endophytic root colonization in rice plants treated with 10 mg l-1 chlorpyrifos solution”

✓ located verbatim in the source · abstract, characters 381–469 · show in text ↑
e1

“Sphingomonas strain HJY-rfp, a chlorpyrifos-degrading endophytic bacterium”

✓ located verbatim in the source · abstract, characters 197–271 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

HJY-rfp migration increased chlorpyrifos degradation in rice leaves by 53.36%.

Organ / stage
leavese0
Treatment
migration of HJY-rfpe0
Interactor
HJY-rfpe0symbiont
Outcome
chlorpyrifos degradation ratee0
Direction
enhancede0
Value
53.36%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“after 24 h the migration of HJY-rfp enhanced the chlorpyrifos degradation rate in leaves and stems by 53.36% and 40.81%, respectively”

✓ located verbatim in the source · abstract, characters 475–608 · show in text ↑
e1

“rice (Oryza sativa)”

✓ located verbatim in the source · abstract, characters 277–296 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

HJY-rfp migration increased chlorpyrifos degradation in rice stems by 40.81%.

Organ / stage
stemse0
Treatment
migration of HJY-rfpe0
Interactor
HJY-rfpe0symbiont
Outcome
chlorpyrifos degradation ratee0
Direction
enhancede0
Value
40.81%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“after 24 h the migration of HJY-rfp enhanced the chlorpyrifos degradation rate in leaves and stems by 53.36% and 40.81%, respectively”

✓ located verbatim in the source · abstract, characters 475–608 · show in text ↑
e1

“rice (Oryza sativa)”

✓ located verbatim in the source · abstract, characters 277–296 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Chlorpyrifos stress changed the rice root exudate profile.

Organ / stage
roote0
Treatment
chlorpyrifos stresse0
Outcome
root exudate profilee0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“the rice root exudate profile (organic acids and amino acids) changed under chlorpyrifos stress”

✓ located verbatim in the source · abstract, characters 622–717 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Root exudate components affected HJY-rfp chemotaxis.

Interactor
HJY-rfpe0symbiont
Outcome
chemotactic behaviour of HJY-rfpe0
Qualifier
variations in the contents of several componentse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“variations in the contents of several components affected the chemotactic behaviour of HJY-rfp”

✓ located verbatim in the source · abstract, characters 723–817 · show in text ↑
e1

“the rice root exudate profile”

✓ located verbatim in the source · abstract, characters 622–651 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

HJY-rfp colonization activated defensive enzymes in rice.

Treatment
HJY-rfp colonizatione0
Interactor
HJY-rfpe0symbiont
Outcome
defensive enzymese0
Direction
activatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“HJY-rfp colonization dramatically activated defensive enzymes”

✓ located verbatim in the source · abstract, characters 819–880 · show in text ↑
e1

“rice (Oryza sativa)”

✓ located verbatim in the source · abstract, characters 277–296 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

Defensive enzyme activation enabled reactive oxygen species scavenging.

Interactor
HJY-rfpe0symbiont
Outcome
scavenging of reactive oxygen speciese0
Qualifier
activated defensive enzymese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“HJY-rfp colonization dramatically activated defensive enzymes, which enabled efficient scavenging of reactive oxygen species”

✓ located verbatim in the source · abstract, characters 819–943 · show in text ↑
e1

“rice (Oryza sativa)”

✓ located verbatim in the source · abstract, characters 277–296 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

HJY-rfp colonization increased rice shoot length by 9.8% under chlorpyrifos damage.

Treatment
HJY-rfp colonizatione0
Interactor
HJY-rfpe0symbiont
Outcome
shoot lengthe0
Direction
increasese0
Value
9.8%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“HJY-rfp colonization dramatically activated defensive enzymes, which enabled efficient scavenging of reactive oxygen species, and led to 9.8%, 22.5%, and 41.9% increases in shoot length, fresh weight, and accumulation of total chlorophyll, respectively, in rice suffering from oxidative damage by chlorpyrifos”

✓ located verbatim in the source · abstract, characters 819–1128 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

HJY-rfp colonization increased rice fresh weight by 22.5% under chlorpyrifos damage.

Treatment
HJY-rfp colonizatione0
Interactor
HJY-rfpe0symbiont
Outcome
fresh weighte0
Direction
increasese0
Value
22.5%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“HJY-rfp colonization dramatically activated defensive enzymes, which enabled efficient scavenging of reactive oxygen species, and led to 9.8%, 22.5%, and 41.9% increases in shoot length, fresh weight, and accumulation of total chlorophyll, respectively, in rice suffering from oxidative damage by chlorpyrifos”

✓ located verbatim in the source · abstract, characters 819–1128 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

HJY-rfp colonization increased rice total chlorophyll accumulation by 41.9%.

Treatment
HJY-rfp colonizatione0
Interactor
HJY-rfpe0symbiont
Outcome
accumulation of total chlorophylle0
Direction
increasese0
Value
41.9%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“HJY-rfp colonization dramatically activated defensive enzymes, which enabled efficient scavenging of reactive oxygen species, and led to 9.8%, 22.5%, and 41.9% increases in shoot length, fresh weight, and accumulation of total chlorophyll, respectively, in rice suffering from oxidative damage by chlorpyrifos”

✓ located verbatim in the source · abstract, characters 819–1128 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Endophytic colonization up-regulated rice detoxification genes.

Treatment
Endophytic colonizatione0
Interactor
Sphingomonas strain HJY-rfpe2symbiont
Outcome
detoxification genese0
Direction
up-regulatione0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Endophytic colonization caused up-regulation of detoxification genes”

✓ located verbatim in the source · abstract, characters 1130–1198 · show in text ↑
e1

“rice (Oryza sativa)”

✓ located verbatim in the source · abstract, characters 277–296 · show in text ↑
e2

“Sphingomonas strain HJY-rfp”

✓ located verbatim in the source · abstract, characters 197–224 · show in text ↑
Associationobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Detoxification gene expression positively correlated with chlorpyrifos degradation.

Gene
detoxification genese0
Outcome
chlorpyrifos degradatione0
Direction
positivee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“detoxification genes that have shown a significant positive correlation with chlorpyrifos degradation in vivo”

✓ located verbatim in the source · abstract, characters 1178–1287 · show in text ↑
e1

“rice (Oryza sativa)”

✓ located verbatim in the source · abstract, characters 277–296 · show in text ↑

infection · growth · Oryza sativa (rice)Results differ

33 papers: 11 positive, 22 negative or no effect

10 papers in the same direction as this paper · 22 in the opposite direction

  1. negative
  2. negative
  3. negative

29 papers more in this group

See all 33 papers →

infection · physiology: pigments · Oryza sativa (rice)Positive and negative results

7 papers: 5 positive, 2 negative or no effect

4 papers in the same direction as this paper · 2 in the opposite direction

  1. negative
  2. negative
  3. positive

3 papers more in this group

See all 7 papers →

infection · molecular: expression · Oryza sativa (rice)Positive and negative results

57 papers: 41 positive, 16 negative or no effect

40 papers in the same direction as this paper · 16 in the opposite direction

  1. no effect
  2. negative
  3. no effect

53 papers more in this group

See all 57 papers →

infection · physiology: enzyme activity · Oryza sativa (rice)Results agree

4 papers: 4 positive, 0 negative or no effect

3 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive
See all 4 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.