Paper · 2020 · PLoS ONE

Characterization of a novel LmSAP gene promoter from Lobularia maritima: Tissue specificity and environmental stress responsiveness

Rania Ben Saad; Walid Ben Romdhane; Nabil Zouari; et al.

4
claims
6
verbatim quotes
22
citations
2
research areas
✓
Open access · cc-by

Abstract

Halophyte Lobularia maritima LmSAP encodes an A20AN1 zinc-finger stress-associated protein which expression is up-regulated by abiotic stresses and heavy metals in transgenic tobacco. To deepen our understanding of LmSAP function, we isolated a 1,147 bp genomic fragment upstream of LmSAP coding sequence designated as PrLmSAP. In silico analyses of PrLmSAP revealed the presence of consensus CAAT and TATA boxes and cis-regulatory elements required for abiotic stress, phytohormones, pathogen, and wound responses, and also for tissue-specific expression. The PrLmSAP sequence was fused to the β-glucuronidase (gusA) reporter gene and transferred to rice. Histochemical GUS staining showed a pattern of tissue-specific expression in transgenic rice, with staining observed in roots, coleoptiles, leaves, stems and floral organs but not in seeds or in the root elongation zone. Wounding strongly stimulated GUS accumulation in leaves and stems. Interestingly, we observed a high stimulation of the promoter activity when rice seedlings were exposed to NaCl, PEG, ABA, MeJA, GA, cold, and heavy metals (Al3+, Cd2+, Cu2+ and Zn2+). These results suggest that the LmSAP promoter can be a convenient tool for stress-inducible gene expression and is a potential candidate for crop genetic engineering.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 4

Observationobservedoriginal resultmeasured

Claim · model-written summary

PrLmSAP contains predicted regulatory elements for stress, hormone and tissue-specific responses.

Taxon
Lobularia maritimaLobularia maritimat0
Gene
PrLmSAPe0
Outcome
consensus CAAT and TATA boxes and cis-regulatory elementse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lobularia maritima
Lobularia maritima · TaxonHectonichus · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“PrLmSAP revealed the presence of consensus CAAT and TATA boxes and cis-regulatory elements required for abiotic stress, phytohormones, pathogen, and wound responses, and also for tissue-specific expression”

✓ located verbatim in the source · abstract, characters 350–555 · show in text ↑
t0

“Lobularia maritima”

✓ located verbatim in the source · title, characters 53–71 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

PrLmSAP drove tissue-specific expression in rice organs but not seeds or the root elongation zone.

Organ / stage
roots, coleoptiles, leaves, stems and floral organse0
Outcome
tissue-specific expressione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“tissue-specific expression in transgenic rice, with staining observed in roots, coleoptiles, leaves, stems and floral organs but not in seeds or in the root elongation zone”

✓ located verbatim in the source · abstract, characters 704–876 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Wounding stimulated GUS accumulation in rice leaves and stems.

Organ / stage
leaves and stemse0
Treatment
Woundinge0
Outcome
GUS accumulatione0
Direction
stimulatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Wounding strongly stimulated GUS accumulation in leaves and stems”

✓ located verbatim in the source · abstract, characters 878–943 · show in text ↑
t0

“transferred to rice. Histochemical GUS staining”

✓ located verbatim in the source · abstract, characters 636–683 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

NaCl, PEG, ABA, MeJA, GA, cold and heavy metals stimulated promoter activity in rice seedlings.

Organ / stage
seedlingse0
Treatment
NaCl, PEG, ABA, MeJA, GA, cold, and heavy metals (Al3+, Cd2+, Cu2+ and Zn2+)e0
Outcome
promoter activitye0
Direction
stimulatione0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“high stimulation of the promoter activity when rice seedlings were exposed to NaCl, PEG, ABA, MeJA, GA, cold, and heavy metals (Al3+, Cd2+, Cu2+ and Zn2+)”

✓ located verbatim in the source · abstract, characters 974–1128 · show in text ↑

copper(2+) · molecular: expression · Oryza sativa (rice)Positive and negative results

2 papers: 1 positive, 1 negative or no effect

1 in the opposite direction

  1. negative
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cadmium(2+) · molecular: expression · Oryza sativa (rice)Positive and negative results

2 papers: 1 positive, 1 negative or no effect

1 in the opposite direction

  1. negative
See all 2 papers →

(-)-methyl jasmonate · molecular: expression · Oryza sativa (rice)Positive and negative results

17 papers: 16 positive, 1 negative or no effect

15 papers in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
  3. positive

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Gibberellic acid · molecular: expression · Oryza sativa (rice)Positive and negative results

25 papers: 18 positive, 7 negative or no effect

17 papers in the same direction as this paper · 7 in the opposite direction

  1. no effect
  2. no effect
  3. no effect

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(+)-abscisic acid · molecular: expression · Oryza sativa (rice)Positive and negative results

69 papers: 54 positive, 15 negative or no effect

53 papers in the same direction as this paper · 15 in the opposite direction

  1. negative
  2. negative
  3. no effect

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heavy metal · molecular: expression · Oryza sativa (rice)Positive and negative results

13 papers: 3 positive, 10 negative or no effect

2 papers in the same direction as this paper · 10 in the opposite direction

  1. no effect
  2. no effect
  3. negative

9 papers more in this group

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cold · molecular: expression · Oryza sativa (rice)Positive and negative results

47 papers: 30 positive, 17 negative or no effect

29 papers in the same direction as this paper · 17 in the opposite direction

  1. no effect
  2. no effect
  3. no effect

43 papers more in this group

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drought · molecular: expression · Oryza sativa (rice)Positive and negative results

80 papers: 58 positive, 22 negative or no effect

57 papers in the same direction as this paper · 22 in the opposite direction

  1. negative
  2. negative
  3. negative

76 papers more in this group

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8 of 9 groups shown: named compounds and organisms first, then groups whose results differ (checked claim by claim), then those with positive and negative results, then the smaller groups.

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.