Paper · 2020 · PLoS ONE

Pyramiding QTLs controlling tolerance against drought, salinity, and submergence in rice through marker assisted breeding

Valarmathi Muthu; Ragavendran Abbai; Jagadeeshselvam Nallathambi; et al.

11
claims
23
verbatim quotes
122
citations
2
research areas
✓
Open access · cc-by

Abstract

Increases in rice productivity are significantly hampered because of the increase in the occurrence of abiotic stresses, including drought, salinity, and submergence. Developing a rice variety with inherent tolerance against these major abiotic stresses will help achieve a sustained increase in rice production under unfavorable conditions. The present study was conducted to develop abiotic stress-tolerant rice genotypes in the genetic background of the popular rice variety Improved White Ponni (IWP) by introgressing major effect quantitative trait loci (QTLs) conferring tolerance against drought (qDTY1.1, qDTY2.1), salinity (Saltol), and submergence (Sub1) through a marker assisted backcross breeding approach. Genotyping of early generation backcrossed inbred lines (BILs) resulted in the identification of three progenies, 3-11-9-2, 3-11-11-1, and 3-11-11-2, possessing all four target QTLs and maximum recovery of the recurrent parent genome (88.46%). BILs exhibited consistent agronomic and grain quality characters compared to those of IWP and enhanced performance against dehydration, salinity, and submergence stress compared with the recurrent parent IWP. BILs exhibited enhanced tolerance against salinity during germination and increased shoot length, root length, and vigor index compared to those of IWP. All three BILs exhibited reduced symptoms of injury because of salinity (NaCl) and dehydration (PEG) than did IWP. At 12 days of submergence stress, BILs exhibited enhanced survival and greater recovery, whereas IWP failed completely. BILs were found to exhibit on par grain and cooking quality characteristics with their parents. Results of this study clearly demonstrated the effects of the target QTLs in reducing damage caused by drought, salinity, and submergence and lead to the development of a triple stress tolerant version of IWP.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 11

Observationobservedoriginal resultmeasured

Claim · model-written summary

Genotyping identified three BILs (3-11-9-2, 3-11-11-1, 3-11-11-2) carrying all four target QTLs, with maximum recovery of the recurrent parent genome of 88.46%.

Material
3-11-9-2, 3-11-11-1, and 3-11-11-2e1
Outcome
recovery of the recurrent parent genomee1
Value
88.46%e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“in rice through marker assisted breeding”

✓ located verbatim in the source · title, characters 81–121 · show in text ↑
e1

“Genotyping of early generation backcrossed inbred lines (BILs) resulted in the identification of three progenies, 3-11-9-2, 3-11-11-1, and 3-11-11-2, possessing all four target QTLs and maximum recovery of the recurrent parent genome (88.46%)”

✓ located verbatim in the source · abstract, characters 720–962 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

BILs showed agronomic and grain quality characters consistent with those of IWP.

Treatment
introgressing major effect quantitative trait loci (QTLs)e2
Outcome
agronomic and grain quality characterse3
Direction
consistente3
Comparator
IWPe3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“in rice through marker assisted breeding”

✓ located verbatim in the source · title, characters 81–121 · show in text ↑
e2

“by introgressing major effect quantitative trait loci (QTLs) conferring tolerance against drought”

✓ located verbatim in the source · abstract, characters 505–602 · show in text ↑
e3

“BILs exhibited consistent agronomic and grain quality characters compared to those of IWP”

✓ located verbatim in the source · abstract, characters 964–1053 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

BILs showed enhanced performance against dehydration, salinity and submergence stress compared with the recurrent parent IWP.

Treatment
dehydration, salinity, and submergence stresse4
Outcome
performancee4
Direction
enhancede4
Comparator
recurrent parent IWPe4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“in rice through marker assisted breeding”

✓ located verbatim in the source · title, characters 81–121 · show in text ↑
e4

“enhanced performance against dehydration, salinity, and submergence stress compared with the recurrent parent IWP”

✓ located verbatim in the source · abstract, characters 1058–1171 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

BILs showed enhanced tolerance to salinity during germination compared with IWP.

Organ / stage
germinatione5
Treatment
salinitye5
Outcome
tolerance against salinitye5
Direction
enhancede5
Comparator
IWPe5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“in rice through marker assisted breeding”

✓ located verbatim in the source · title, characters 81–121 · show in text ↑
e5

“BILs exhibited enhanced tolerance against salinity during germination and increased shoot length, root length, and vigor index compared to those of IWP”

✓ located verbatim in the source · abstract, characters 1173–1324 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

BILs showed increased shoot length, root length and vigor index compared with IWP.

Outcome
shoot length, root length, and vigor indexe5
Direction
increasede5
Comparator
IWPe5

Not reportedTreatment

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“in rice through marker assisted breeding”

✓ located verbatim in the source · title, characters 81–121 · show in text ↑
e5

“BILs exhibited enhanced tolerance against salinity during germination and increased shoot length, root length, and vigor index compared to those of IWP”

✓ located verbatim in the source · abstract, characters 1173–1324 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

BILs showed reduced symptoms of injury under salinity and dehydration compared with IWP.

Treatment
salinity (NaCl) and dehydration (PEG)e6
Outcome
symptoms of injurye6
Direction
reducede6
Comparator
IWPe6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“in rice through marker assisted breeding”

✓ located verbatim in the source · title, characters 81–121 · show in text ↑
e6

“All three BILs exhibited reduced symptoms of injury because of salinity (NaCl) and dehydration (PEG) than did IWP”

✓ located verbatim in the source · abstract, characters 1326–1439 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

At 12 days of submergence stress, BILs showed enhanced survival, whereas IWP failed.

Treatment
submergence stresse7
Outcome
survivale7
Direction
enhancede7
Comparator
IWPe7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“in rice through marker assisted breeding”

✓ located verbatim in the source · title, characters 81–121 · show in text ↑
e7

“At 12 days of submergence stress, BILs exhibited enhanced survival and greater recovery, whereas IWP failed completely”

✓ located verbatim in the source · abstract, characters 1441–1559 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

At 12 days of submergence stress, BILs showed greater recovery than IWP, which failed completely.

Treatment
submergence stresse7
Outcome
recoverye7
Direction
greatere7
Qualifier
IWP failed completelye7
Comparator
IWPe7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“in rice through marker assisted breeding”

✓ located verbatim in the source · title, characters 81–121 · show in text ↑
e7

“At 12 days of submergence stress, BILs exhibited enhanced survival and greater recovery, whereas IWP failed completely”

✓ located verbatim in the source · abstract, characters 1441–1559 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

The target QTLs reduced damage caused by drought, salinity and submergence.

Treatment
target QTLse1
Outcome
damagee1
Direction
reducinge1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“in rice through marker assisted breeding”

✓ located verbatim in the source · title, characters 81–121 · show in text ↑
e1

“clearly demonstrated the effects of the target QTLs in reducing damage caused by drought, salinity, and submergence”

✓ located verbatim in the source · abstract, characters 1679–1794 · show in text ↑
Observationobservedoriginal resultpositivebasis n/a

Claim · model-written summary

The QTL introgression led to a triple stress tolerant version of IWP.

Outcome
development of a triple stress tolerant version of IWPe1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“in rice through marker assisted breeding”

✓ located verbatim in the source · title, characters 81–121 · show in text ↑
e1

“lead to the development of a triple stress tolerant version of IWP”

✓ located verbatim in the source · abstract, characters 1799–1865 · show in text ↑
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

BILs had grain and cooking quality characteristics on par with their parents.

Outcome
grain and cooking quality characteristicse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“in rice through marker assisted breeding”

✓ located verbatim in the source · title, characters 81–121 · show in text ↑
e1

“BILs were found to exhibit on par grain and cooking quality characteristics with their parents”

✓ located verbatim in the source · abstract, characters 1561–1655 · show in text ↑

sodium chloride · crop injury · Oryza sativa (rice)Positive and negative results

2 papers: 1 positive, 1 negative or no effect

1 in the opposite direction

  1. negative
See all 2 papers →

salinity · crop injury · Oryza sativa (rice)Positive and negative results

2 papers: 1 positive, 1 negative or no effect

1 in the opposite direction

  1. negative
See all 2 papers →

transgenic · quality: grain · Oryza sativa (rice)Positive and negative results

6 papers: 3 positive, 3 negative or no effect

2 papers in the same direction as this paper · 3 in the opposite direction

  1. positive
  2. positive
  3. positive

2 papers more in this group

See all 6 papers →

flooding · survival · Oryza sativa (rice)Positive and negative results

12 papers: 7 positive, 5 negative or no effect

6 papers in the same direction as this paper · 5 in the opposite direction

  1. negative
  2. negative
  3. negative

8 papers more in this group

See all 12 papers →

salinity · disease · Oryza sativa (rice)Positive and negative results

25 papers: 16 positive, 9 negative or no effect

15 papers in the same direction as this paper · 9 in the opposite direction

  1. negative
  2. negative
  3. negative

21 papers more in this group

See all 25 papers →

drought · crop injury · Oryza sativa (rice)Results agree

3 papers: 3 positive, 0 negative or no effect

2 papers in the same direction as this paper

  1. positive
  2. positive
See all 3 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.