Paper · 2013 · PLANT PHYSIOLOGY

FAR-RED ELONGATED HYPOCOTYL3 and FAR-RED IMPAIRED RESPONSE1 Transcription Factors Integrate Light and Abscisic Acid Signaling in Arabidopsis

W. Tang; Q. Ji; Y. Huang; et al.

9
claims
17
verbatim quotes
158
citations
2
research areas
✓
Open access · cc-by

Abstract

Light and the phytohormone abscisic acid (ABA) regulate overlapping processes in plants, such as seed germination and seedling development. However, the molecular mechanism underlying the interaction between light and ABA signaling is largely unknown. Here, we show that FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED IMPAIRED RESPONSE1 (FAR1), two key positive transcription factors in the phytochrome A pathway, directly bind to the promoter of ABA-Insensitive5 and activate its expression in Arabidopsis (Arabidopsis thaliana). Disruption of FHY3 and/or FAR1 reduces the sensitivity to ABA-mediated inhibition of seed germination, seedling development, and primary root growth. The seed germination of the fhy3 mutant is also less sensitive to salt and osmotic stress than that of the wild type. Constitutive expression of ABA-Insensitive5 restores the seed germination response of fhy3. Furthermore, the expression of several ABA-responsive genes is decreased in the fhy3 and/or far1 mutants during seed imbibition. Consistently, FHY3 and FAR1 transcripts are up-regulated by ABA and abiotic stresses. Moreover, the fhy3 and far1 mutants have wider stomata, lose water faster, and are more sensitive to drought than the wild type. These findings demonstrate that FHY3 and FAR1 are positive regulators of ABA signaling and provide insight into the integration of light and ABA signaling, a process that may allow plants to better adapt to environmental stresses.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 9

Mechanismobservedoriginal resultpositivemeasured

Claim · model-written summary

FHY3 and FAR1 bind the ABA-Insensitive5 promoter and activate expression.

Taxon
ArabidopsisArabidopsise0
Gene
FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED IMPAIRED RESPONSE1 (FAR1)e0
Outcome
activate its expressione0
Qualifier
bind to the promoter of ABA-Insensitive5e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED IMPAIRED RESPONSE1 (FAR1), two key positive transcription factors in the phytochrome A pathway, directly bind to the promoter of ABA-Insensitive5 and activate its expression in Arabidopsis (Arabidopsis thaliana)”

✓ located verbatim in the source · abstract, characters 271–530 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

FHY3 or FAR1 disruption reduced ABA inhibition sensitivity of germination, seedling development and root growth.

Taxon
ArabidopsisArabidopsist0
Treatment
Disruption of FHY3 and/or FAR1e0
Gene
FHY3 and/or FAR1e0
Outcome
sensitivity to ABA-mediated inhibition of seed germination, seedling development, and primary root growthe0
Direction
reducese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Disruption of FHY3 and/or FAR1 reduces the sensitivity to ABA-mediated inhibition of seed germination, seedling development, and primary root growth”

✓ located verbatim in the source · abstract, characters 532–680 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 129–140 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

fhy3 germination was less sensitive to salt and osmotic stress than wild type.

Taxon
ArabidopsisArabidopsist0
Material
fhy3 mutante0
Treatment
salt and osmotic stresse0
Outcome
seed germinatione0
Direction
less sensitivee0
Comparator
wild typee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The seed germination of the fhy3 mutant is also less sensitive to salt and osmotic stress than that of the wild type”

✓ located verbatim in the source · abstract, characters 682–798 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 129–140 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Constitutive ABA-Insensitive5 expression restored fhy3 germination response.

Taxon
ArabidopsisArabidopsist0
Material
fhy3e0
Treatment
Constitutive expression of ABA-Insensitive5e0
Gene
ABA-Insensitive5e0
Outcome
seed germination responsee0
Direction
restorese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Constitutive expression of ABA-Insensitive5 restores the seed germination response of fhy3”

✓ located verbatim in the source · abstract, characters 800–890 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 129–140 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

Several ABA-responsive genes had decreased expression in fhy3 and far1 mutants during imbibition.

Taxon
ArabidopsisArabidopsist0
Material
fhy3 and/or far1 mutantse0
Organ / stage
seed imbibitione0
Outcome
expression of several ABA-responsive genese0
Direction
decreasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the expression of several ABA-responsive genes is decreased in the fhy3 and/or far1 mutants during seed imbibition”

✓ located verbatim in the source · abstract, characters 905–1019 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 129–140 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

ABA and abiotic stresses up-regulated FHY3 and FAR1 transcripts.

Taxon
ArabidopsisArabidopsist0
Treatment
ABA and abiotic stressese0
Gene
FHY3 and FAR1e0
Outcome
FHY3 and FAR1 transcriptse0
Direction
up-regulatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“FHY3 and FAR1 transcripts are up-regulated by ABA and abiotic stresses”

✓ located verbatim in the source · abstract, characters 1035–1105 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 129–140 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

fhy3 and far1 mutants had wider stomata than wild type.

Taxon
ArabidopsisArabidopsist0
Material
fhy3 and far1 mutantse0
Outcome
stomatae0
Direction
widere0
Comparator
wild typee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the fhy3 and far1 mutants have wider stomata, lose water faster, and are more sensitive to drought than the wild type”

✓ located verbatim in the source · abstract, characters 1117–1234 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 129–140 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

fhy3 and far1 mutants lost water faster than wild type.

Taxon
ArabidopsisArabidopsist0
Material
fhy3 and far1 mutantse0
Outcome
lose watere0
Direction
fastere0
Comparator
wild typee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the fhy3 and far1 mutants have wider stomata, lose water faster, and are more sensitive to drought than the wild type”

✓ located verbatim in the source · abstract, characters 1117–1234 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 129–140 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

fhy3 and far1 mutants were more sensitive to drought than wild type.

Taxon
ArabidopsisArabidopsist0
Material
fhy3 and far1 mutantse0
Outcome
sensitive to droughte0
Direction
moree0
Comparator
wild typee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the fhy3 and far1 mutants have wider stomata, lose water faster, and are more sensitive to drought than the wild type”

✓ located verbatim in the source · abstract, characters 1117–1234 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 129–140 · show in text ↑

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26 papers: 13 positive, 13 negative or no effect

12 papers in the same direction as this paper · 13 in the opposite direction

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(+)-abscisic acid · molecular: expression · ArabidopsisPositive and negative results

82 papers: 57 positive, 25 negative or no effect

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abiotic · molecular: expression · ArabidopsisPositive and negative results

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overexpression · growth · ArabidopsisPositive and negative results

109 papers: 71 positive, 38 negative or no effect

70 papers in the same direction as this paper · 38 in the opposite direction

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147 papers: 46 positive, 101 negative or no effect

100 papers in the same direction as this paper · 46 in the opposite direction

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.