Paper · 2010 · Journal of Bacteriology

Role of the FeoB Protein and Siderophore in Promoting Virulence ofXanthomonas oryzaepv. oryzae on Rice

Alok Pandey; Ramesh V. Sonti

10
claims
24
verbatim quotes
85
citations
2
research areas
✓
Open access

Abstract

Xanthomonas oryzae pv. oryzae causes bacterial blight, a serious disease of rice. Our analysis revealed that the X. oryzae pv. oryzae genome encodes genes responsible for iron uptake through FeoB (homolog of the major bacterial ferrous iron transporter) and a siderophore. A mutation in the X. oryzae pv. oryzae feoB gene causes severe virulence deficiency, growth deficiency in iron-limiting medium, and constitutive production of a siderophore. We identified an iron regulated xss gene cluster, in which xssABCDE (Xanthomonas siderophore synthesis) and xsuA (Xanthomonas siderophore utilization) genes encode proteins involved in biosynthesis and utilization of X. oryzae pv. oryzae siderophore. Mutations in the xssA, xssB, and xssE genes cause siderophore deficiency and growth restriction under iron-limiting conditions but are virulence proficient. An xsuA mutant displayed impairment in utilization of native siderophore, suggesting that XsuA acts as a specific receptor for a ferric-siderophore complex. Histochemical and fluorimetric assays with gusA fusions indicate that, during in planta growth, the feoB gene is expressed and that the xss operon is not expressed. This study represents the first report describing a role for feoB in virulence of any plant-pathogenic bacterium and the first functional characterization of a siderophore-biosynthetic gene cluster in any xanthomonad.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 10

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

A feoB mutation in Xanthomonas oryzae pv. oryzae causes severe virulence deficiency on rice.

Treatment
A mutation in the X. oryzae pv. oryzae feoB genee1
Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaee0pathogen
Gene
feoBe1
Outcome
virulencee1
Direction
deficiencye1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Xanthomonas oryzae pv. oryzae causes bacterial blight, a serious disease of rice”

✓ located verbatim in the source · abstract, characters 0–80 · show in text ↑
e1

“A mutation in the X. oryzae pv. oryzae feoB gene causes severe virulence deficiency”

✓ located verbatim in the source · abstract, characters 273–356 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

A feoB mutation causes growth deficiency of Xanthomonas oryzae pv. oryzae in iron-limiting medium.

Treatment
A mutation in the X. oryzae pv. oryzae feoB genee1
Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaee0pathogen
Gene
feoBe1
Outcome
growth deficiency in iron-limiting mediume2
Direction
deficiencye2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Xanthomonas oryzae pv. oryzae causes bacterial blight, a serious disease of rice”

✓ located verbatim in the source · abstract, characters 0–80 · show in text ↑
e1

“A mutation in the X. oryzae pv. oryzae feoB gene causes severe virulence deficiency”

✓ located verbatim in the source · abstract, characters 273–356 · show in text ↑
e2

“growth deficiency in iron-limiting medium”

✓ located verbatim in the source · abstract, characters 358–399 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

A feoB mutation makes Xanthomonas oryzae pv. oryzae produce siderophore constitutively.

Treatment
A mutation in the X. oryzae pv. oryzae feoB genee1
Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaee0pathogen
Gene
feoBe1
Outcome
production of a siderophoree3
Direction
constitutivee3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Xanthomonas oryzae pv. oryzae causes bacterial blight, a serious disease of rice”

✓ located verbatim in the source · abstract, characters 0–80 · show in text ↑
e1

“A mutation in the X. oryzae pv. oryzae feoB gene causes severe virulence deficiency”

✓ located verbatim in the source · abstract, characters 273–356 · show in text ↑
e3

“constitutive production of a siderophore”

✓ located verbatim in the source · abstract, characters 405–445 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Mutations in xssA, xssB and xssE cause siderophore deficiency and growth restriction under iron-limiting conditions.

Treatment
Mutations in the xssA, xssB, and xssE genese4
Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaee0pathogen
Gene
xssA, xssB, and xssEe4
Outcome
siderophore deficiency and growth restriction under iron-limiting conditionse4
Direction
deficiencye4

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Xanthomonas oryzae pv. oryzae causes bacterial blight, a serious disease of rice”

✓ located verbatim in the source · abstract, characters 0–80 · show in text ↑
e4

“Mutations in the xssA, xssB, and xssE genes cause siderophore deficiency and growth restriction under iron-limiting conditions”

✓ located verbatim in the source · abstract, characters 698–824 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Mutations in xssA, xssB and xssE leave Xanthomonas oryzae pv. oryzae virulence on rice unchanged.

Treatment
Mutations in the xssA, xssB, and xssE genese4
Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaee0pathogen
Gene
xssA, xssB, and xssEe4
Outcome
virulencee5
Direction
proficiente5

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Xanthomonas oryzae pv. oryzae causes bacterial blight, a serious disease of rice”

✓ located verbatim in the source · abstract, characters 0–80 · show in text ↑
e4

“Mutations in the xssA, xssB, and xssE genes cause siderophore deficiency and growth restriction under iron-limiting conditions”

✓ located verbatim in the source · abstract, characters 698–824 · show in text ↑
e5

“but are virulence proficient”

✓ located verbatim in the source · abstract, characters 825–853 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

An xsuA mutant is impaired in utilising native siderophore.

Treatment
An xsuA mutante6
Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaee0pathogen
Gene
xsuAe6
Outcome
utilization of native siderophoree6
Direction
impairmente6

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Xanthomonas oryzae pv. oryzae causes bacterial blight, a serious disease of rice”

✓ located verbatim in the source · abstract, characters 0–80 · show in text ↑
e6

“An xsuA mutant displayed impairment in utilization of native siderophore”

✓ located verbatim in the source · abstract, characters 855–927 · show in text ↑
Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

XsuA probably acts as a specific receptor for a ferric-siderophore complex.

Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaee0pathogen
Gene
XsuAe7
Outcome
a specific receptor for a ferric-siderophore complexe7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Xanthomonas oryzae pv. oryzae causes bacterial blight, a serious disease of rice”

✓ located verbatim in the source · abstract, characters 0–80 · show in text ↑
e7

“suggesting that XsuA acts as a specific receptor for a ferric-siderophore complex”

✓ located verbatim in the source · abstract, characters 929–1010 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The feoB gene is expressed by Xanthomonas oryzae pv. oryzae during growth in planta.

Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaee0pathogen
Gene
feoBe1
Outcome
expressede1
Setting
in planta growthe1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Xanthomonas oryzae pv. oryzae causes bacterial blight, a serious disease of rice”

✓ located verbatim in the source · abstract, characters 0–80 · show in text ↑
e1

“during in planta growth, the feoB gene is expressed”

✓ located verbatim in the source · abstract, characters 1083–1134 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The xss operon is not expressed by Xanthomonas oryzae pv. oryzae during growth in planta.

Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaee0pathogen
Gene
xss operone2
Outcome
not expressede2
Setting
in planta growthe1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Xanthomonas oryzae pv. oryzae causes bacterial blight, a serious disease of rice”

✓ located verbatim in the source · abstract, characters 0–80 · show in text ↑
e1

“during in planta growth, the feoB gene is expressed”

✓ located verbatim in the source · abstract, characters 1083–1134 · show in text ↑
e2

“the xss operon is not expressed”

✓ located verbatim in the source · abstract, characters 1144–1175 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

An iron-regulated xss gene cluster was identified in Xanthomonas oryzae pv. oryzae.

Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaee0pathogen
Gene
xss gene clustere1
Outcome
iron regulated xss gene clustere1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Xanthomonas oryzae pv. oryzae causes bacterial blight, a serious disease of rice”

✓ located verbatim in the source · abstract, characters 0–80 · show in text ↑
e1

“We identified an iron regulated xss gene cluster”

✓ located verbatim in the source · abstract, characters 447–495 · show in text ↑

Xanthomonas oryzae pv. oryzae · disease · Oryza sativa (rice)Results agree

4 papers: 4 positive, 0 negative or no effect

3 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive
See all 4 papers →

loss of function · Xanthomonas oryzae pv. oryzae · Oryza sativa (rice)Positive and negative results

29 papers: 11 positive, 18 negative or no effect

17 papers in the same direction as this paper · 11 in the opposite direction

  1. positive
  2. positive
  3. positive

25 papers more in this group

See all 29 papers →

loss of function · disease · Oryza sativa (rice)Positive and negative results

154 papers: 86 positive, 68 negative or no effect

85 papers in the same direction as this paper · 68 in the opposite direction

  1. positive
  2. positive
  3. negative

150 papers more in this group

See all 154 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.