Paper · 2016 · Plant Biotechnology Journal

Targeted promoter editing for rice resistance to Xanthomonas oryzae pv. oryzae reveals differential activities for SWEET 14 ‐inducing TAL effectors

Servane Blanvillain‐Baufumé; Maik Reschke; Montserrat Solé; et al.

9
claims
18
verbatim quotes
229
citations
3
research areas
✓
Open access · cc-by

Abstract

As a key virulence strategy to cause bacterial leaf blight, Xanthomonas oryzae pv. oryzae (Xoo) injects into the plant cell DNA-binding proteins called transcription activator-like effectors (TALEs) that bind to effector-binding elements (EBEs) in a sequence-specific manner, resulting in host gene induction. TALEs AvrXa7, PthXo3, TalC and Tal5, found in geographically distant Xoo strains, all target OsSWEET14, thus considered as a pivotal TALE target acting as major susceptibility factor during rice-Xoo interactions. Here, we report the generation of an allele library of the OsSWEET14 promoter through stable expression of TALE-nuclease (TALEN) constructs in rice. The susceptibility level of lines carrying mutations in AvrXa7, Tal5 or TalC EBEs was assessed. Plants edited in AvrXa7 or Tal5 EBEs were resistant to bacterial strains relying on the corresponding TALE. Surprisingly, although indels within TalC EBE prevented OsSWEET14 induction in response to BAI3 wild-type bacteria relying on TalC, loss of TalC responsiveness failed to confer resistance to this strain. The TalC EBE mutant line was, however, resistant to a strain expressing an artificial SWEET14-inducing TALE whose EBE was also edited in this line. This work offers the first set of alleles edited in TalC EBE and uncovers a distinct, broader range of activities for TalC compared to AvrXa7 or Tal5. We propose the existence of additional targets for TalC beyond SWEET14, suggesting that TALE-mediated plant susceptibility may result from induction of several, genetically redundant, host susceptibility genes by a single effector.

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Claims 9

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Rice lines edited in the AvrXa7 effector-binding element resisted bacterial strains relying on AvrXa7.

Treatment
edited in AvrXa7e0
Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaet0pathogen
Gene
AvrXa7e0
Outcome
resistant to bacterial strains relying on the corresponding TALEe0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice resistance to Xanthomonas oryzae pv. oryzae”

✓ located verbatim in the source · title, characters 30–78 · show in text ↑
e0

“Plants edited in AvrXa7 or Tal5 EBEs were resistant to bacterial strains relying on the corresponding TALE.”

✓ located verbatim in the source · abstract, characters 768–875 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Rice lines edited in the Tal5 effector-binding element resisted bacterial strains relying on Tal5.

Treatment
edited in AvrXa7 or Tal5 EBEse0
Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaet0pathogen
Gene
Tal5e0
Outcome
resistant to bacterial strains relying on the corresponding TALEe0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice resistance to Xanthomonas oryzae pv. oryzae”

✓ located verbatim in the source · title, characters 30–78 · show in text ↑
e0

“Plants edited in AvrXa7 or Tal5 EBEs were resistant to bacterial strains relying on the corresponding TALE.”

✓ located verbatim in the source · abstract, characters 768–875 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Indels in the TalC binding element prevented OsSWEET14 induction by BAI3 wild-type bacteria.

Treatment
indels within TalC EBEe0
Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaet0pathogen
Gene
OsSWEET14e0
Outcome
OsSWEET14 inductione0
Direction
preventede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice resistance to Xanthomonas oryzae pv. oryzae”

✓ located verbatim in the source · title, characters 30–78 · show in text ↑
e0

“indels within TalC EBE prevented OsSWEET14 induction in response to BAI3 wild-type bacteria relying on TalC”

✓ located verbatim in the source · abstract, characters 899–1006 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Loss of TalC responsiveness did not confer resistance to the BAI3 strain.

Treatment
loss of TalC responsivenesse0
Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaet0pathogen
Outcome
resistance to this straine0
Direction
failed to confere0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice resistance to Xanthomonas oryzae pv. oryzae”

✓ located verbatim in the source · title, characters 30–78 · show in text ↑
e0

“loss of TalC responsiveness failed to confer resistance to this strain”

✓ located verbatim in the source · abstract, characters 1008–1078 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

The TalC binding-element mutant resisted a strain expressing an artificial SWEET14-inducing effector whose binding element was edited.

Material
TalC EBE mutant linee0
Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaet0pathogen
Outcome
resistant to a strain expressing an artificial SWEET14-inducing TALEe0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice resistance to Xanthomonas oryzae pv. oryzae”

✓ located verbatim in the source · title, characters 30–78 · show in text ↑
e0

“The TalC EBE mutant line was, however, resistant to a strain expressing an artificial SWEET14-inducing TALE whose EBE was also edited in this line.”

✓ located verbatim in the source · abstract, characters 1080–1227 · show in text ↑
Method / resourceobservedoriginal resultbasis n/a

Claim · model-written summary

The work provides alleles edited in the TalC binding element.

Outcome
first set of alleles edited in TalC EBEe0
Comparator
firste0

Not reportedValue

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice resistance to Xanthomonas oryzae pv. oryzae”

✓ located verbatim in the source · title, characters 30–78 · show in text ↑
e0

“This work offers the first set of alleles edited in TalC EBE”

✓ located verbatim in the source · abstract, characters 1228–1288 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

TalC showed a broader range of activities than AvrXa7 or Tal5.

Gene
TalCe0
Outcome
broader range of activitiese0
Direction
broadere0
Comparator
AvrXa7 or Tal5e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice resistance to Xanthomonas oryzae pv. oryzae”

✓ located verbatim in the source · title, characters 30–78 · show in text ↑
e0

“uncovers a distinct, broader range of activities for TalC compared to AvrXa7 or Tal5”

✓ located verbatim in the source · abstract, characters 1293–1377 · show in text ↑
Mechanismhypothesisoriginal resultbasis n/a

Claim · model-written summary

The authors propose that TalC has additional targets beyond SWEET14.

Gene
TalCe0
Outcome
additional targets for TalC beyond SWEET14e0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice resistance to Xanthomonas oryzae pv. oryzae”

✓ located verbatim in the source · title, characters 30–78 · show in text ↑
e0

“We propose the existence of additional targets for TalC beyond SWEET14”

✓ located verbatim in the source · abstract, characters 1379–1449 · show in text ↑
Mechanismhypothesisoriginal resultnegativebasis n/a

Claim · model-written summary

The authors suggest that one effector may induce several genetically redundant host susceptibility genes.

Outcome
plant susceptibilitye0
Qualifier
induction of several, genetically redundant, host susceptibility genes by a single effectore0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice resistance to Xanthomonas oryzae pv. oryzae”

✓ located verbatim in the source · title, characters 30–78 · show in text ↑
e0

“TALE-mediated plant susceptibility may result from induction of several, genetically redundant, host susceptibility genes by a single effector”

✓ located verbatim in the source · abstract, characters 1467–1609 · show in text ↑

pathogen product · Xanthomonas oryzae pv. oryzae · Oryza sativa (rice)Positive and negative results

6 papers: 5 positive, 1 negative or no effect

4 papers in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
  3. positive

2 papers more in this group

See all 6 papers →

loss of function · Xanthomonas oryzae pv. oryzae · Oryza sativa (rice)Positive and negative results

29 papers: 11 positive, 18 negative or no effect

10 papers in the same direction as this paper · 18 in the opposite direction

  1. negative
  2. no effect
  3. no effect

25 papers more in this group

See all 29 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.