Paper · 2013 · Botanical studies

Rapid regeneration and ploidy stability of ‘cv IR36’ indica rice (Oryza Sativa. L) confers efficient protocol for in vitro callus organogenesis and Agrobacterium tumefaciens mediated transformation

Subramanian Radhesh Krishnan; Arumugam Mohana Priya; Manikandan Ramesh

6
claims
11
verbatim quotes
25
citations
4
research areas
✓
Open access · cc-by

Abstract

BACKGROUND: Cereal crops are the major targets for transformation mediated crop improvement and IR36 is an early maturing, high yielding, insect and disease resistant rice variety however, it is abiotic stress sensitive. Hence, development of an efficient and reproducible micropropagation system via somatic embryogenesis and Agrobacterium tumefaciens mediated transformation is prerequisite to develop abiotic stress tolerant IR36. Further, Genetic stability of analysis of plantlets through RAPD and ISSR and Ploidy level through Flow cytometry (FCM) measurement of 2C DNA content is necessary for future application of transformed IR36. RESULTS: In this study, Mature seeds inoculated on (Murashige and Skoog) MS medium with 11.31 μM 2, 4-dichlorophenoxyacetic acid (2, 4-D) and 0.3 μM Kinetin (Kn) had highest callus induction frequency (98%). The highest regeneration frequency (80%) was observed in MS + 13.28 μM Benzyladenine (BA) with 8.06 μM α-naphthalene acetic acid (NAA). Randomly Amplified Polymorphic DNA (RAPD), Inter Simple Sequence Repeat (ISSR) and Flow Cytometry (FCM) analysis showed no significant variation in the 2C DNA (0.81 pg/2C) content and Ploidy level between wild type IR36 and in vitro maintained rice lines. Of the various OD bacterial culture, an optimum OD of 0.4 and inoculation duration of 10 min resulted in efficient Agrobacterium-mediated transformation. β-glucuronidase activity was maximum in callus (99.05%). CONCLUSIONS: These results described here confirm the reliability of this protocol for micropropagation and delivery of desirable gene using A. tumefaciens into indica rice.

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Claims 6

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

MS medium with 11.31 μM 2,4-D and 0.3 μM kinetin gave the highest callus induction frequency, 98%.

Organ / stage
Mature seedse0
Treatment
MS medium with 11.31 μM 2, 4-dichlorophenoxyacetic acid (2, 4-D) and 0.3 μM Kinetin (Kn)e0
Outcome
callus induction frequencye0
Direction
higheste0
Value
98%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa Indica Group
Oryza sativa Indica Group · TaxonNo machine-readable author provided. Ranveig assumed (based on copyright claims). · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Mature seeds inoculated on (Murashige and Skoog) MS medium with 11.31 μM 2, 4-dichlorophenoxyacetic acid (2, 4-D) and 0.3 μM Kinetin (Kn) had highest callus induction frequency (98%).”

✓ located verbatim in the source · abstract, characters 665–848 · show in text ↑
t0

“indica rice”

✓ located verbatim in the source · title, characters 53–64 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

MS with 13.28 μM BA and 8.06 μM NAA gave the highest regeneration frequency, 80%.

Treatment
MS + 13.28 μM Benzyladenine (BA) with 8.06 μM α-naphthalene acetic acid (NAA)e0
Outcome
regeneration frequencye0
Direction
higheste0
Value
80%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa Indica Group
Oryza sativa Indica Group · TaxonNo machine-readable author provided. Ranveig assumed (based on copyright claims). · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The highest regeneration frequency (80%) was observed in MS + 13.28 μM Benzyladenine (BA) with 8.06 μM α-naphthalene acetic acid (NAA).”

✓ located verbatim in the source · abstract, characters 849–984 · show in text ↑
t0

“indica rice”

✓ located verbatim in the source · title, characters 53–64 · show in text ↑
Observationobservedoriginal resultno effectnot significant (as stated)measured

Claim · model-written summary

Wild type IR36 and in vitro rice lines did not differ significantly in 2C DNA content or ploidy.

Outcome
2C DNA (0.81 pg/2C) content and Ploidy levele0
Direction
no significant variatione0
Value
0.81 pg/2Ce0
Comparator
wild type IR36e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“analysis showed no significant variation in the 2C DNA (0.81 pg/2C) content and Ploidy level between wild type IR36 and in vitro maintained rice lines.”

✓ located verbatim in the source · abstract, characters 1089–1240 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

An OD of 0.4 and ten-minute inoculation yielded efficient Agrobacterium-mediated transformation.

Treatment
an optimum OD of 0.4 and inoculation duration of 10 mine0
Interactor
Agrobacterium tumefaciensAgrobacterium tumefacienst1other
Outcome
Agrobacterium-mediated transformatione0
Direction
efficiente0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa Indica Group
Oryza sativa Indica Group · TaxonNo machine-readable author provided. Ranveig assumed (based on copyright claims). · Public domain · Wikimedia Commons ↗
Agrobacterium tumefaciens
Agrobacterium tumefaciens · InteractorClemson University - USDA Cooperative Extension Slide Series, Bugwood.org · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Of the various OD bacterial culture, an optimum OD of 0.4 and inoculation duration of 10 min resulted in efficient Agrobacterium-mediated transformation.”

✓ located verbatim in the source · abstract, characters 1241–1394 · show in text ↑
t0

“indica rice”

✓ located verbatim in the source · title, characters 53–64 · show in text ↑
t1

“Agrobacterium tumefaciens”

✓ located verbatim in the source · title, characters 148–173 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

β-glucuronidase activity was maximal in callus at 99.05%.

Organ / stage
calluse0
Gene
β-glucuronidasee0
Outcome
β-glucuronidase activitye0
Direction
maximume0
Value
99.05%e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa Indica Group
Oryza sativa Indica Group · TaxonNo machine-readable author provided. Ranveig assumed (based on copyright claims). · Public domain · Wikimedia Commons ↗

Verbatim

e0

“β-glucuronidase activity was maximum in callus (99.05%).”

✓ located verbatim in the source · abstract, characters 1395–1451 · show in text ↑
t0

“indica rice”

✓ located verbatim in the source · title, characters 53–64 · show in text ↑
Method / resourceauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

The protocol was judged reliable for micropropagation and gene delivery into indica rice.

Interactor
A. tumefaciensAgrobacterium tumefaciense0other
Outcome
reliability of this protocole0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa Indica Group
Oryza sativa Indica Group · TaxonNo machine-readable author provided. Ranveig assumed (based on copyright claims). · Public domain · Wikimedia Commons ↗
Agrobacterium tumefaciens
Agrobacterium tumefaciens · InteractorClemson University - USDA Cooperative Extension Slide Series, Bugwood.org · Public domain · Wikimedia Commons ↗

Verbatim

e0

“These results described here confirm the reliability of this protocol for micropropagation and delivery of desirable gene using A. tumefaciens into indica rice.”

✓ located verbatim in the source · abstract, characters 1465–1625 · show in text ↑

kinetin · growth · Oryza sativa (rice)Results differ

59 papers: 52 positive, 7 negative or no effect

51 papers in the same direction as this paper · 6 in the opposite direction · 1 reporting no difference from an alternative

  1. negative
  2. negative
  3. no effect

55 papers more in this group

See all 59 papers →

1-naphthaleneacetic acid · growth · Oryza sativa (rice)Results differ

71 papers: 65 positive, 6 negative or no effect

64 papers in the same direction as this paper · 6 in the opposite direction

  1. positive
  2. positive
  3. no effect

67 papers more in this group

See all 71 papers →

N-benzyladenine · growth · Oryza sativa (rice)Results differ

72 papers: 68 positive, 4 negative or no effect

67 papers in the same direction as this paper · 3 in the opposite direction · 1 reporting no difference from an alternative

  1. positive
  2. positive
  3. negative

68 papers more in this group

See all 72 papers →

2,4-D · growth · Oryza sativa (rice)Positive and negative results

107 papers: 102 positive, 5 negative or no effect

101 papers in the same direction as this paper · 5 in the opposite direction

  1. positive
  2. positive
  3. positive

103 papers more in this group

See all 107 papers →

in vitro · growth · Oryza sativa (rice)Positive and negative results

165 papers: 140 positive, 25 negative or no effect

139 papers in the same direction as this paper · 24 in the opposite direction · 1 reporting no difference from an alternative

  1. positive
  2. positive
  3. negative

161 papers more in this group

See all 165 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.