Paper · 2007 · Journal of Experimental Botany

Involvement of hormones and KNOXI genes in early Arabidopsis seedling development

Přemysl Souček; Petr Klíma; Alena Reková; et al.

16
claims
34
verbatim quotes
23
citations
3
research areas
✓
Open access

Abstract

Plant hormones control plant development by modulating the expression of regulatory genes, including homeobox-containing KNOXI genes. However, much remains to be elucidated about the interactions involved. Therefore, hormonal regulation of KNOXI gene expression was investigated using hormone applications and an inducible transgenic ipt expression system to increase endogenous cytokinin (CK) levels. Treatments with auxin, abscisic acid (ABA), cytokinins, ethylene, and gibberellin (GA) did not result in ectopic expression of the BP (BREVIPEDICELLUS) gene. However, BP expression was strongly reduced by ABA, increased by auxin treatment (correlating with the initiation of lateral root meristems, which strongly express BP), and did not significantly respond to short-term treatments with the other hormones in whole seedlings. Following short-term ipt activation, organ-specific differential regulation of KNOXI gene expression was observed. While several KNOXI genes were transiently up-regulated to low levels, STM was selectively repressed (especially at low light) in hypocotyls. In cotyledons, activation of CK-responsive genes preceded ipt induction, suggesting that CKs are transported more rapidly than the inducing agent (dexamethasone). Long-term increases in CK levels induced raised levels of several KNOXI transcripts in hypocotyls, correlating with the radial expansion of vascular tissues, the main domains of KNOXI gene expression, suggesting that CKs had little effect on KNOXI promoter activity. No alterations in hormone sensitivity were observed in a bp null mutant. Constitutive BP overexpression caused reductions in the length and number of lateral roots, while the primary root remained unaffected. The transgenic seedlings displayed weak, but significant, alterations in sensitivity to ABA, CK, and 1-amino-cyclopropane-1-carboxylic acid.

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Claims 16

Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Auxin, abscisic acid, cytokinin, ethylene and gibberellin treatments did not induce ectopic expression of BP.

Taxon
ArabidopsisArabidopsist1
Treatment
auxin, abscisic acid (ABA), cytokinins, ethylene, and gibberellin (GA)e1
Gene
BPe1
Outcome
ectopic expression of the BPe1

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t1

“Involvement of hormones and KNOXI genes in early Arabidopsis seedling development”

✓ located verbatim in the source · title, characters 0–81 · show in text ↑
e1

“Treatments with auxin, abscisic acid (ABA), cytokinins, ethylene, and gibberellin (GA) did not result in ectopic expression of the BP (BREVIPEDICELLUS) gene”

✓ located verbatim in the source · abstract, characters 402–558 · show in text ↑
Intervention effectobservedoriginal resultno effectnot significant (as stated)measured

Claim · model-written summary

Short-term treatments with the other hormones did not significantly change BP expression in whole seedlings.

Taxon
ArabidopsisArabidopsist1
Treatment
short-term treatments with the other hormonese2
Gene
BPe2
Outcome
BP expressione2

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t1

“Involvement of hormones and KNOXI genes in early Arabidopsis seedling development”

✓ located verbatim in the source · title, characters 0–81 · show in text ↑
e2

“BP expression was strongly reduced by ABA, increased by auxin treatment (correlating with the initiation of lateral root meristems, which strongly express BP), and did not significantly respond to short-term treatments with the other hormones in whole seedlings”

✓ located verbatim in the source · abstract, characters 569–830 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

ABA strongly reduced BP expression.

Taxon
ArabidopsisArabidopsist1
Treatment
ABAe2
Gene
BPe2
Outcome
BP expressione2
Direction
strongly reducede2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t1

“Involvement of hormones and KNOXI genes in early Arabidopsis seedling development”

✓ located verbatim in the source · title, characters 0–81 · show in text ↑
e2

“BP expression was strongly reduced by ABA, increased by auxin treatment (correlating with the initiation of lateral root meristems, which strongly express BP), and did not significantly respond to short-term treatments with the other hormones in whole seedlings”

✓ located verbatim in the source · abstract, characters 569–830 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Auxin treatment increased BP expression.

Taxon
ArabidopsisArabidopsist1
Treatment
auxin treatmente2
Gene
BPe2
Outcome
BP expressione2
Direction
increasede2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t1

“Involvement of hormones and KNOXI genes in early Arabidopsis seedling development”

✓ located verbatim in the source · title, characters 0–81 · show in text ↑
e2

“BP expression was strongly reduced by ABA, increased by auxin treatment (correlating with the initiation of lateral root meristems, which strongly express BP), and did not significantly respond to short-term treatments with the other hormones in whole seedlings”

✓ located verbatim in the source · abstract, characters 569–830 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

BP expression correlated with the initiation of lateral root meristems.

Taxon
ArabidopsisArabidopsist1
Organ / stage
lateral root meristemse2
Outcome
initiation of lateral root meristemse2

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t1

“Involvement of hormones and KNOXI genes in early Arabidopsis seedling development”

✓ located verbatim in the source · title, characters 0–81 · show in text ↑
e2

“BP expression was strongly reduced by ABA, increased by auxin treatment (correlating with the initiation of lateral root meristems, which strongly express BP), and did not significantly respond to short-term treatments with the other hormones in whole seedlings”

✓ located verbatim in the source · abstract, characters 569–830 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Short-term ipt activation transiently up-regulated several KNOXI genes to low levels.

Taxon
ArabidopsisArabidopsist1
Treatment
short-term ipt activatione4
Gene
KNOXI genese3
Outcome
KNOXI genese3
Direction
up-regulatede3
Value
low levelse3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t1

“Involvement of hormones and KNOXI genes in early Arabidopsis seedling development”

✓ located verbatim in the source · title, characters 0–81 · show in text ↑
e3

“While several KNOXI genes were transiently up-regulated to low levels, STM was selectively repressed (especially at low light) in hypocotyls”

✓ located verbatim in the source · abstract, characters 947–1087 · show in text ↑
e4

“Following short-term ipt activation, organ-specific differential regulation of KNOXI gene expression was observed”

✓ located verbatim in the source · abstract, characters 832–945 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Short-term ipt activation selectively repressed STM in hypocotyls, especially at low light.

Taxon
ArabidopsisArabidopsist1
Organ / stage
hypocotylse3
Treatment
short-term ipt activatione4
Gene
STMe3
Outcome
STMe3
Direction
repressede3
Qualifier
especially at low lighte3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t1

“Involvement of hormones and KNOXI genes in early Arabidopsis seedling development”

✓ located verbatim in the source · title, characters 0–81 · show in text ↑
e3

“While several KNOXI genes were transiently up-regulated to low levels, STM was selectively repressed (especially at low light) in hypocotyls”

✓ located verbatim in the source · abstract, characters 947–1087 · show in text ↑
e4

“Following short-term ipt activation, organ-specific differential regulation of KNOXI gene expression was observed”

✓ located verbatim in the source · abstract, characters 832–945 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Activation of CK-responsive genes in cotyledons preceded ipt induction.

Taxon
ArabidopsisArabidopsist1
Organ / stage
cotyledonse5
Outcome
activation of CK-responsive genese5
Qualifier
preceded ipt inductione5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t1

“Involvement of hormones and KNOXI genes in early Arabidopsis seedling development”

✓ located verbatim in the source · title, characters 0–81 · show in text ↑
e5

“In cotyledons, activation of CK-responsive genes preceded ipt induction”

✓ located verbatim in the source · abstract, characters 1089–1160 · show in text ↑
Mechanismauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

Cytokinins appear to be transported more rapidly than the inducing agent dexamethasone.

Taxon
ArabidopsisArabidopsist1
Compound
CKse6
Outcome
transported more rapidly than the inducing agente6
Qualifier
(dexamethasone)e6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t1

“Involvement of hormones and KNOXI genes in early Arabidopsis seedling development”

✓ located verbatim in the source · title, characters 0–81 · show in text ↑
e6

“suggesting that CKs are transported more rapidly than the inducing agent (dexamethasone)”

✓ located verbatim in the source · abstract, characters 1162–1250 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Long-term increases in CK levels raised levels of several KNOXI transcripts in hypocotyls.

Taxon
ArabidopsisArabidopsist1
Organ / stage
hypocotylse7
Treatment
Long-term increases in CK levelse7
Gene
KNOXIe7
Outcome
KNOXI transcriptse7
Direction
raised levelse7

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t1

“Involvement of hormones and KNOXI genes in early Arabidopsis seedling development”

✓ located verbatim in the source · title, characters 0–81 · show in text ↑
e7

“Long-term increases in CK levels induced raised levels of several KNOXI transcripts in hypocotyls, correlating with the radial expansion of vascular tissues, the main domains of KNOXI gene expression, suggesting that CKs had little effect on KNOXI promoter activity”

✓ located verbatim in the source · abstract, characters 1252–1517 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

KNOXI transcript levels correlated with the radial expansion of vascular tissues.

Taxon
ArabidopsisArabidopsist1
Organ / stage
vascular tissuese7
Outcome
radial expansion of vascular tissuese7

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t1

“Involvement of hormones and KNOXI genes in early Arabidopsis seedling development”

✓ located verbatim in the source · title, characters 0–81 · show in text ↑
e7

“Long-term increases in CK levels induced raised levels of several KNOXI transcripts in hypocotyls, correlating with the radial expansion of vascular tissues, the main domains of KNOXI gene expression, suggesting that CKs had little effect on KNOXI promoter activity”

✓ located verbatim in the source · abstract, characters 1252–1517 · show in text ↑
Intervention effectauthor interpretationoriginal resultno effectmeasured

Claim · model-written summary

Long-term CK increases had little effect on KNOXI promoter activity.

Taxon
ArabidopsisArabidopsist1
Treatment
Long-term increases in CK levelse7
Outcome
KNOXI promoter activitye7

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t1

“Involvement of hormones and KNOXI genes in early Arabidopsis seedling development”

✓ located verbatim in the source · title, characters 0–81 · show in text ↑
e7

“Long-term increases in CK levels induced raised levels of several KNOXI transcripts in hypocotyls, correlating with the radial expansion of vascular tissues, the main domains of KNOXI gene expression, suggesting that CKs had little effect on KNOXI promoter activity”

✓ located verbatim in the source · abstract, characters 1252–1517 · show in text ↑
Associationobservedoriginal resultno effectmeasured

Claim · model-written summary

The bp null mutant showed no alteration in hormone sensitivity.

Taxon
ArabidopsisArabidopsist1
Material
bp null mutante2
Outcome
hormone sensitivitye2

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t1

“Involvement of hormones and KNOXI genes in early Arabidopsis seedling development”

✓ located verbatim in the source · title, characters 0–81 · show in text ↑
e2

“No alterations in hormone sensitivity were observed in a bp null mutant”

✓ located verbatim in the source · abstract, characters 1519–1590 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Constitutive BP overexpression reduced the length and number of lateral roots.

Taxon
ArabidopsisArabidopsist1
Organ / stage
lateral rootse3
Treatment
Constitutive BP overexpressione3
Gene
BPe3
Outcome
length and number of lateral rootse3
Direction
reductionse3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t1

“Involvement of hormones and KNOXI genes in early Arabidopsis seedling development”

✓ located verbatim in the source · title, characters 0–81 · show in text ↑
e3

“Constitutive BP overexpression caused reductions in the length and number of lateral roots, while the primary root remained unaffected”

✓ located verbatim in the source · abstract, characters 1592–1726 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Constitutive BP overexpression left the primary root unaffected.

Taxon
ArabidopsisArabidopsist1
Treatment
Constitutive BP overexpressione3
Outcome
primary roote3
Qualifier
remained unaffectede3

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t1

“Involvement of hormones and KNOXI genes in early Arabidopsis seedling development”

✓ located verbatim in the source · title, characters 0–81 · show in text ↑
e3

“Constitutive BP overexpression caused reductions in the length and number of lateral roots, while the primary root remained unaffected”

✓ located verbatim in the source · abstract, characters 1592–1726 · show in text ↑
Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Transgenic seedlings showed weak but significant alterations in sensitivity to ABA, CK and ACC.

Taxon
ArabidopsisArabidopsist1
Material
transgenic seedlingse4
Outcome
sensitivity to ABA, CK, and 1-amino-cyclopropane-1-carboxylic acide4
Qualifier
weak, but significante4

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t1

“Involvement of hormones and KNOXI genes in early Arabidopsis seedling development”

✓ located verbatim in the source · title, characters 0–81 · show in text ↑
e4

“The transgenic seedlings displayed weak, but significant, alterations in sensitivity to ABA, CK, and 1-amino-cyclopropane-1-carboxylic acid”

✓ located verbatim in the source · abstract, characters 1728–1867 · show in text ↑

Gibberellic acid · molecular: expression · ArabidopsisPositive and negative results

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1 paper in the same direction as this paper · 6 in the opposite direction

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ethene · molecular: expression · ArabidopsisPositive and negative results

35 papers: 21 positive, 14 negative or no effect

13 papers in the same direction as this paper · 21 in the opposite direction

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(+)-abscisic acid · molecular: expression · ArabidopsisPositive and negative results

82 papers: 57 positive, 25 negative or no effect

24 papers in the same direction as this paper · 57 in the opposite direction

  1. positive
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class · molecular: expression · ArabidopsisPositive and negative results

75 papers: 46 positive, 29 negative or no effect

28 papers in the same direction as this paper · 46 in the opposite direction

  1. positive
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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.