Paper · 2010 · Persoonia - Molecular Phylogeny and Evolution of Fungi

Coniochaeta (Lecythophora), Collophora gen. nov. and Phaeomoniella species associated with wood necroses of Prunus trees

U. Damm; P.H. Fourie; P.W. Crous

4
claims
8
verbatim quotes
131
citations
2
research areas
✓
Open access

Abstract

Species of the genus Coniochaeta (anamorph: Lecythophora) are known as pathogens of woody hosts, but can also cause opportunistic human infections. Several fungi with conidial stages resembling Lecythophora were isolated from necrotic wood samples of Prunus trees in South Africa. In order to reveal their phylogenetic relationships, these fungi were studied on a morphological and molecular (5.8S nrDNA, ITS-1, ITS-2, GAPDH, EF-1alpha, 28S nrDNA, 18S nrDNA) basis. Some of the isolates were identified as Coniochaeta (Sordariomycetes), including C. velutina and two new species, C. africana and C. prunicola. The majority of the isolates, however, formed pycnidial or pseudopycnidial synanamorphs and were not closely related to Coniochaeta. According to their 28S nrDNA phylogeny, they formed two distinct groups, one of which was closely related to Helotiales (Leotiomycetes). The new genus Collophora is proposed, comprising five species that frequently occur in necrotic peach and nectarine wood, namely Co. africana, Co. capensis, Co. paarla, Co. pallida and Co. rubra. The second group was closely related to Phaeomoniella chlamydospora (Eurotiomycetes), occurring mainly in plum wood. Besides P. zymoides occurring on Prunus salicina, four new species are described, namely P. dura, P. effusa, P. prunicola and P. tardicola. In a preliminary inoculation study, pathogenicity was confirmed for some of the new species on apricot, peach or plum wood.

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Claims 4

Observationobservedoriginal resultbasis n/a

Claim · model-written summary

Some isolates from Prunus wood were identified as Coniochaeta, including C. velutina and two new species, C. africana and C. prunicola.

Taxon
PrunusPrunust0
Interactor
ConiochaetaConiochaetae0other
Outcome
identified as Coniochaetae0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Prunus
Prunus · Taxon · picture of the genus (one of its species)Benjamin Gimmel, BenHur · CC BY-SA 3.0 · Wikimedia Commons ↗
Coniochaeta
Coniochaeta · InteractorSigrid Jakob · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

t0

“wood necroses of Prunus trees”

✓ located verbatim in the source · title, characters 91–120 · show in text ↑
e0

“Some of the isolates were identified as Coniochaeta (Sordariomycetes), including C. velutina and two new species, C. africana and C. prunicola”

✓ located verbatim in the source · abstract, characters 466–608 · show in text ↑
Observationobservedoriginal resultbasis n/a

Claim · model-written summary

The new genus Collophora, with five species, frequently occurs in necrotic peach and nectarine wood.

Interactor
CollophoraCollophorae1other
Outcome
frequently occure1
Value
five speciese1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Prunus persica
Prunus persica · TaxonAllagash Brewing · CC BY 2.0 · Wikimedia Commons ↗
Prunus persica var. nucipersica
Prunus persica var. nucipersica · Taxon · picture of the speciesAllagash Brewing · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

t0

“wood necroses of Prunus trees”

✓ located verbatim in the source · title, characters 91–120 · show in text ↑
e1

“The new genus Collophora is proposed, comprising five species that frequently occur in necrotic peach and nectarine wood”

✓ located verbatim in the source · abstract, characters 880–1000 · show in text ↑
Observationobservedoriginal resultbasis n/a

Claim · model-written summary

The Phaeomoniella chlamydospora-related group occurs mainly in plum wood.

Interactor
Phaeomoniella chlamydosporaPhaeomoniella chlamydosporae2other
Outcome
occurring mainlye2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Prunus domestica
Prunus domestica · TaxonYAMAMAYA · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“wood necroses of Prunus trees”

✓ located verbatim in the source · title, characters 91–120 · show in text ↑
e2

“The second group was closely related to Phaeomoniella chlamydospora (Eurotiomycetes), occurring mainly in plum wood”

✓ located verbatim in the source · abstract, characters 1076–1191 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Pathogenicity was confirmed for some of the new species on apricot, peach or plum wood in a preliminary inoculation study.

Treatment
preliminary inoculation studye3
Outcome
pathogenicitye3
Qualifier
for some of the new speciese3

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Prunus domestica
Prunus domestica · TaxonYAMAMAYA · CC BY-SA 3.0 · Wikimedia Commons ↗
Prunus persica
Prunus persica · TaxonAllagash Brewing · CC BY 2.0 · Wikimedia Commons ↗
Prunus armeniaca
Prunus armeniaca · TaxonFir0002 · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“wood necroses of Prunus trees”

✓ located verbatim in the source · title, characters 91–120 · show in text ↑
e3

“In a preliminary inoculation study, pathogenicity was confirmed for some of the new species on apricot, peach or plum wood”

✓ located verbatim in the source · abstract, characters 1333–1455 · show in text ↑

inoculation · disease · Prunus armeniaca (apricot)Positive and negative results

7 papers: 1 positive, 6 negative or no effect

5 papers in the same direction as this paper · 1 in the opposite direction

  1. positive
  2. negative
  3. no effect

3 papers more in this group

See all 7 papers →

inoculation · disease · Prunus domestica (plum)Positive and negative results

8 papers: 2 positive, 6 negative or no effect

5 papers in the same direction as this paper · 2 in the opposite direction

  1. positive
  2. positive
  3. negative

4 papers more in this group

See all 8 papers →

inoculation · disease · Prunus persica (peach)Positive and negative results

24 papers: 6 positive, 18 negative or no effect

17 papers in the same direction as this paper · 6 in the opposite direction

  1. positive
  2. positive
  3. positive

20 papers more in this group

See all 24 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.