Paper · 2012 · Plant Cell Reports

Differential regulation of alanine aminotransferase homologues by abiotic stresses in wheat (Triticum aestivum L.) seedlings

Maria Kendziorek; Andrzej Paszkowski; Barbara Zagdańska

15
claims
31
verbatim quotes
48
citations
2
research areas
✓
Open access · cc-by

Abstract

Wheat (Triticum aestivum L.) seedlings contain four alanine aminotransferase (AlaAT) homologues. Two of them encode AlaAT enzymes, whereas two homologues act as glumate:glyoxylate aminotransferase (GGAT). To address the function of the distinct AlaAT homologues a comparative examination of the changes in transcript level together with the enzyme activity and alanine and glutamate content in wheat seedlings subjected to low oxygen availability, nitrogen and light deficiency has been studied. Shoots of wheat seedlings were more tolerant to hypoxia than the roots as judging on the basis of enzyme activity and transcript level. Hypoxia induced AlaAT1 earlier in roots than in shoots, while AlaAT2 and GGAT were unaffected. The increase in AlaAT activity lagged behind the increase in alanine content. Nitrogen deficiency has little effect on the activity of GGAT. In contrast, lower activity of AlaAT and the level of mRNA for AlaAT1 and AlaAT2 in wheat seedlings growing on a nitrogen-free medium seems to indicate that AlaAT is regulated by the availability of nitrogen. Both AlaAT and GGAT activities were present in etiolated wheat seedlings but their activity was half of that observed in light-grown seedlings. Exposure of etiolated seedlings to light caused an increase in enzyme activities and up-regulated GGAT1. It is proposed that hypoxia-induced AlaAT1 and light-induced peroxisomal GGAT1 appears to be crucial for the regulation of energy availability in plants grown under unfavourable environmental conditions. Key message In young wheat seedlings, both AlaAT and GGAT are down-regulated by nitrogen deficiency, whereas AlaAT1 is upregulated by hypoxia and GGAT1 by light.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 15

Observationobservedoriginal resultmeasured

Claim · model-written summary

Wheat seedlings contain four AlaAT homologues.

Gene
alanine aminotransferase (AlaAT)e0
Outcome
four alanine aminotransferase (AlaAT) homologuese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Wheat (Triticum aestivum L.) seedlings contain four alanine aminotransferase (AlaAT) homologues”

✓ located verbatim in the source · abstract, characters 0–95 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Two homologues encode AlaAT enzymes and two act as GGAT.

Gene
AlaAT enzymese0
Outcome
glumate:glyoxylate aminotransferase (GGAT)e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Two of them encode AlaAT enzymes, whereas two homologues act as glumate:glyoxylate aminotransferase (GGAT)”

✓ located verbatim in the source · abstract, characters 97–203 · show in text ↑
e1

“Wheat (Triticum aestivum L.) seedlings”

✓ located verbatim in the source · abstract, characters 0–38 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Shoots were more tolerant to hypoxia than roots.

Organ / stage
Shootse0
Outcome
tolerant to hypoxiae0
Direction
more tolerante0
Comparator
rootse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Shoots of wheat seedlings were more tolerant to hypoxia than the roots”

✓ located verbatim in the source · abstract, characters 496–566 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Hypoxia induced AlaAT1 earlier in roots than shoots.

Organ / stage
rootse0
Treatment
Hypoxiae0
Gene
AlaAT1e0
Outcome
AlaAT1e0
Direction
earliere0
Comparator
shootse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Hypoxia induced AlaAT1 earlier in roots than in shoots”

✓ located verbatim in the source · abstract, characters 632–686 · show in text ↑
e1

“wheat (Triticum aestivum L.) seedlings”

✓ located verbatim in the source · title, characters 86–124 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

AlaAT2 was unaffected by hypoxia.

Treatment
Hypoxiae2
Gene
AlaAT2e0
Outcome
AlaAT2e0
Direction
unaffectede0
Comparator
shootse3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“while AlaAT2 and GGAT were unaffected”

✓ located verbatim in the source · abstract, characters 688–725 · show in text ↑
e1

“wheat (Triticum aestivum L.) seedlings”

✓ located verbatim in the source · title, characters 86–124 · show in text ↑
e2

“Hypoxia induced AlaAT1”

✓ located verbatim in the source · abstract, characters 632–654 · show in text ↑
e3

“in shoots”

✓ located verbatim in the source · abstract, characters 677–686 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

GGAT was unaffected by hypoxia.

Treatment
Hypoxiae2
Gene
GGATe0
Outcome
GGATe0
Direction
unaffectede0
Comparator
shootse3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“while AlaAT2 and GGAT were unaffected”

✓ located verbatim in the source · abstract, characters 688–725 · show in text ↑
e1

“wheat (Triticum aestivum L.) seedlings”

✓ located verbatim in the source · title, characters 86–124 · show in text ↑
e2

“Hypoxia induced AlaAT1”

✓ located verbatim in the source · abstract, characters 632–654 · show in text ↑
e3

“in shoots”

✓ located verbatim in the source · abstract, characters 677–686 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

AlaAT activity increased after alanine content increased.

Gene
AlaATe0
Outcome
AlaAT activitye0
Direction
increasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The increase in AlaAT activity lagged behind the increase in alanine content”

✓ located verbatim in the source · abstract, characters 727–803 · show in text ↑
e1

“wheat (Triticum aestivum L.) seedlings”

✓ located verbatim in the source · title, characters 86–124 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Nitrogen deficiency had little effect on GGAT activity.

Treatment
Nitrogen deficiencye0
Gene
GGATe0
Outcome
activity of GGATe0
Direction
little effecte0
Comparator
nitrogen-free mediume2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Nitrogen deficiency has little effect on the activity of GGAT”

✓ located verbatim in the source · abstract, characters 805–866 · show in text ↑
e1

“wheat (Triticum aestivum L.) seedlings”

✓ located verbatim in the source · title, characters 86–124 · show in text ↑
e2

“a nitrogen-free medium”

✓ located verbatim in the source · abstract, characters 979–1001 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

AlaAT activity was lower on nitrogen-free medium.

Treatment
nitrogen-free mediume0
Gene
AlaATe0
Outcome
activity of AlaATe0
Direction
lowere0
Comparator
light-grown seedlingse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“lower activity of AlaAT and the level of mRNA for AlaAT1 and AlaAT2 in wheat seedlings growing on a nitrogen-free medium”

✓ located verbatim in the source · abstract, characters 881–1001 · show in text ↑
e1

“light-grown seedlings”

✓ located verbatim in the source · abstract, characters 1198–1219 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

AlaAT1 and AlaAT2 mRNA levels were lower on nitrogen-free medium.

Treatment
nitrogen-free mediume0
Gene
AlaAT1 and AlaAT2e0
Outcome
level of mRNAe0
Direction
lowere0
Comparator
light-grown seedlingse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“lower activity of AlaAT and the level of mRNA for AlaAT1 and AlaAT2 in wheat seedlings growing on a nitrogen-free medium”

✓ located verbatim in the source · abstract, characters 881–1001 · show in text ↑
e1

“light-grown seedlings”

✓ located verbatim in the source · abstract, characters 1198–1219 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

AlaAT activity in etiolated seedlings was half that in light-grown seedlings.

Treatment
etiolatede0
Gene
AlaATe0
Outcome
AlaATe0
Direction
halfe0
Value
halfe0
Comparator
light-grown seedlingse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Both AlaAT and GGAT activities were present in etiolated wheat seedlings but their activity was half of that observed in light-grown seedlings”

✓ located verbatim in the source · abstract, characters 1077–1219 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

GGAT activity in etiolated seedlings was half that in light-grown seedlings.

Treatment
etiolatede0
Gene
GGATe0
Outcome
GGATe0
Direction
halfe0
Value
halfe0
Comparator
light-grown seedlingse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Both AlaAT and GGAT activities were present in etiolated wheat seedlings but their activity was half of that observed in light-grown seedlings”

✓ located verbatim in the source · abstract, characters 1077–1219 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Light exposure increased aminotransferase enzyme activities.

Treatment
lighte0
Outcome
enzyme activitiese0
Direction
increasee0
Comparator
etiolated seedlingse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Exposure of etiolated seedlings to light caused an increase in enzyme activities and up-regulated GGAT1”

✓ located verbatim in the source · abstract, characters 1221–1324 · show in text ↑
e1

“wheat (Triticum aestivum L.) seedlings”

✓ located verbatim in the source · title, characters 86–124 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Light exposure up-regulated GGAT1.

Treatment
lighte0
Gene
GGAT1e0
Outcome
GGAT1e0
Direction
up-regulatede0
Comparator
etiolated seedlingse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Exposure of etiolated seedlings to light caused an increase in enzyme activities and up-regulated GGAT1”

✓ located verbatim in the source · abstract, characters 1221–1324 · show in text ↑
e1

“wheat (Triticum aestivum L.) seedlings”

✓ located verbatim in the source · title, characters 86–124 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors propose hypoxia-induced AlaAT1 and light-induced GGAT1 as crucial to energy availability.

Gene
AlaAT1 and light-induced peroxisomal GGAT1e0
Outcome
regulation of energy availabilitye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“hypoxia-induced AlaAT1 and light-induced peroxisomal GGAT1 appears to be crucial for the regulation of energy availability”

✓ located verbatim in the source · abstract, characters 1346–1468 · show in text ↑
e1

“wheat (Triticum aestivum L.) seedlings”

✓ located verbatim in the source · title, characters 86–124 · show in text ↑

light · soil: biology · Triticum aestivum (wheat)Positive and negative results

3 papers: 2 positive, 1 negative or no effect

1 paper in the same direction as this paper · 1 in the opposite direction

  1. no effect
  2. positive
See all 3 papers →

in vitro · molecular: expression · Triticum aestivum (wheat)Positive and negative results

5 papers: 4 positive, 1 negative or no effect

4 in the opposite direction

  1. positive
  2. positive
  3. positive

1 paper more in this group

See all 5 papers →

in vitro · molecular: metabolites · Triticum aestivum (wheat)Positive and negative results

17 papers: 13 positive, 4 negative or no effect

3 papers in the same direction as this paper · 13 in the opposite direction

  1. positive
  2. positive
  3. positive

13 papers more in this group

See all 17 papers →

nitrogen · molecular: expression · Triticum aestivum (wheat)Positive and negative results

37 papers: 26 positive, 11 negative or no effect

25 papers in the same direction as this paper · 11 in the opposite direction

This paper is about lacking the nutrient, so it counts the other way round here.

  1. no effect
  2. no effect
  3. no effect

33 papers more in this group

See all 37 papers →

nitrogen · molecular: metabolites · Triticum aestivum (wheat)Positive and negative results

166 papers: 114 positive, 52 negative or no effect

113 papers in the same direction as this paper · 49 in the opposite direction · 3 reporting no difference from an alternative

This paper is about lacking the nutrient, so it counts the other way round here.

  1. negative
  2. no effect
  3. no effect

162 papers more in this group

See all 166 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.