Paper · 2010 · Illinois Digital Environment for Access to Learning and Scholarship (University of Illinois at Urbana-Champaign)

Genomic and biochemical investigation of soybean antioxidant metabolism in response to growth at elevated carbon dioxide and elevated ozone

Kelly M. Gillespie

13
claims
29
verbatim quotes
2
citations
3
research areas
✓
Open access

Abstract

Metabolism in an environment containing of 21% oxygen has a high risk of oxidative damage due to the formation of reactive oxygen species. Therefore, plants have evolved an antioxidant system consisting of metabolites and enzymes that either directly scavenge ROS or recycle the antioxidant metabolites. Ozone is a temporally dynamic molecule that is both naturally occurring as well as an environmental pollutant that is predicted to increase in concentration in the future as anthropogenic precursor emissions rise. It has been hypothesized that any elevation in ozone concentration will cause increased oxidative stress in plants and therefore enhanced subsequent antioxidant metabolism, but evidence for this response is variable. Along with increasing atmospheric ozone concentrations, atmospheric carbon dioxide concentration is also rising and is predicted to continue rising in the future. The effect of elevated carbon dioxide concentrations on antioxidant metabolism varies among different studies in the literature. Therefore, the question of how antioxidant metabolism will be affected in the most realistic future atmosphere, with increased carbon dioxide concentration and increased ozone concentration, has yet to be answered, and is the subject of my thesis research. First, in order to capture as much of the variability in the antioxidant system as possible, I developed a suite of high-throughput quantitative assays for a variety of antioxidant metabolites and enzymes. I optimized these assays for Glycine max (soybean), one of the most important food crops in the world. These assays provide accurate, rapid and high-throughput measures of both the general and specific antioxidant action of plant tissue extracts. Second, I investigated how growth at either elevated carbon dioxide concentration or chronic elevated ozone concentration altered antioxidant metabolism, and the ability of soybean to respond to an acute oxidative stress in a controlled environment study. I found that growth at chronic elevated ozone concentration increased the antioxidant capacity of leaves, but was unchanged or only slightly increased following an acute oxidative stress, suggesting that growth at chronic elevated ozone concentration primed the antioxidant system. Growth at high carbon dioxide concentration decreased the antioxidant capacity of leaves, increased the response of the existing antioxidant enzymes to an acute oxidative stress, but dampened and delayed the transcriptional response, suggesting an entirely different regulation of the antioxidant system. Third, I tested the findings from the controlled environment study in a field setting by investigating the response of the soybean antioxidant system to growth at elevated carbon dioxide concentration, chronic elevated ozone concentration and the combination of elevated carbon dioxide concentration and elevated ozone concentration. In this study, I confirmed that growth at elevated carbon dioxide concentration decreased specific components of antioxidant metabolism in the field. I also verified that increasing ozone concentration is highly correlated with increases in the metabolic and genomic components of antioxidant metabolism, regardless of carbon dioxide concentration environment, but that the response to increasing ozone concentration was dampened at elevated carbon dioxide concentration. In addition, I found evidence suggesting an up regulation of respiratory metabolism at higher ozone concentration, which would supply energy and carbon for detoxification and repair of cellular damage. These results consistently support the conclusion that growth at elevated carbon dioxide concentration decreases antioxidant metabolism while growth at elevated ozone concentration increases antioxidant metabolism.

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Claims 13

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

Optimized soybean tissue assays provided accurate, rapid and high-throughput antioxidant measures.

Taxon
Glycine max (soybean)Glycine maxe0
Outcome
accurate, rapid and high-throughput measurese0

Not reportedComparatorValue

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“I optimized these assays for Glycine max (soybean), one of the most important food crops in the world. These assays provide accurate, rapid and high-throughput measures of both the general and specific antioxidant action of plant tissue extracts.”

✓ located verbatim in the source · abstract, characters 1490–1736 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Chronic elevated ozone increased soybean leaf antioxidant capacity.

Taxon
soybeanGlycine maxt0
Treatment
chronic elevated ozone concentratione0
Outcome
antioxidant capacity of leavese0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“soybean”

✓ located verbatim in the source · title, characters 41–48 · show in text ↑
e0

“growth at chronic elevated ozone concentration increased the antioxidant capacity of leaves”

✓ located verbatim in the source · abstract, characters 2006–2097 · show in text ↑
Intervention effectobservedoriginal resultmixedmeasured

Claim · model-written summary

Following acute oxidative stress, antioxidant capacity was unchanged or only slightly increased in ozone-grown plants.

Taxon
soybeanGlycine maxt0
Treatment
acute oxidative stresse0
Outcome
antioxidant capacitye1
Direction
unchanged or only slightly increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“soybean”

✓ located verbatim in the source · title, characters 41–48 · show in text ↑
e0

“but was unchanged or only slightly increased following an acute oxidative stress”

✓ located verbatim in the source · abstract, characters 2099–2179 · show in text ↑
e1

“growth at chronic elevated ozone concentration increased the antioxidant capacity of leaves”

✓ located verbatim in the source · abstract, characters 2006–2097 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

The author inferred that chronic ozone primed the soybean antioxidant system.

Taxon
soybeanGlycine maxt0
Treatment
chronic elevated ozone concentratione0
Outcome
antioxidant systeme0
Direction
primede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“soybean”

✓ located verbatim in the source · title, characters 41–48 · show in text ↑
e0

“growth at chronic elevated ozone concentration primed the antioxidant system”

✓ located verbatim in the source · abstract, characters 2197–2273 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

High carbon dioxide decreased soybean leaf antioxidant capacity.

Taxon
soybeanGlycine maxt0
Treatment
high carbon dioxide concentratione0
Outcome
antioxidant capacity of leavese0
Direction
decreasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“soybean”

✓ located verbatim in the source · title, characters 41–48 · show in text ↑
e0

“Growth at high carbon dioxide concentration decreased the antioxidant capacity of leaves”

✓ located verbatim in the source · abstract, characters 2275–2363 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

High carbon dioxide increased the existing antioxidant enzyme response to acute oxidative stress.

Taxon
soybeanGlycine maxt0
Treatment
high carbon dioxide concentratione1
Outcome
response of the existing antioxidant enzymese0
Direction
increasede0
Qualifier
acute oxidative stresse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“soybean”

✓ located verbatim in the source · title, characters 41–48 · show in text ↑
e0

“increased the response of the existing antioxidant enzymes to an acute oxidative stress”

✓ located verbatim in the source · abstract, characters 2365–2452 · show in text ↑
e1

“Growth at high carbon dioxide concentration decreased the antioxidant capacity of leaves”

✓ located verbatim in the source · abstract, characters 2275–2363 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

High carbon dioxide dampened the transcriptional response to acute oxidative stress.

Taxon
soybeanGlycine maxt0
Treatment
high carbon dioxide concentratione1
Outcome
transcriptional responsee0
Direction
dampenede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“soybean”

✓ located verbatim in the source · title, characters 41–48 · show in text ↑
e0

“dampened and delayed the transcriptional response”

✓ located verbatim in the source · abstract, characters 2458–2507 · show in text ↑
e1

“Growth at high carbon dioxide concentration decreased the antioxidant capacity of leaves”

✓ located verbatim in the source · abstract, characters 2275–2363 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

High carbon dioxide delayed the transcriptional response to acute oxidative stress.

Taxon
soybeanGlycine maxt0
Treatment
high carbon dioxide concentratione1
Outcome
transcriptional responsee0
Direction
delayede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“soybean”

✓ located verbatim in the source · title, characters 41–48 · show in text ↑
e0

“dampened and delayed the transcriptional response”

✓ located verbatim in the source · abstract, characters 2458–2507 · show in text ↑
e1

“Growth at high carbon dioxide concentration decreased the antioxidant capacity of leaves”

✓ located verbatim in the source · abstract, characters 2275–2363 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Elevated carbon dioxide decreased specific antioxidant metabolism components in the field.

Taxon
soybeanGlycine maxt0
Treatment
elevated carbon dioxide concentratione0
Outcome
specific components of antioxidant metabolisme0
Direction
decreasede0
Setting
in the fielde0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“soybean”

✓ located verbatim in the source · title, characters 41–48 · show in text ↑
e0

“growth at elevated carbon dioxide concentration decreased specific components of antioxidant metabolism in the field”

✓ located verbatim in the source · abstract, characters 2946–3062 · show in text ↑
Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Increasing ozone correlated with increased metabolic antioxidant components regardless of carbon dioxide environment.

Taxon
soybeanGlycine maxt0
Treatment
increasing ozone concentratione0
Outcome
metabolice0
Direction
increasese0
Qualifier
regardless of carbon dioxide concentration environmente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“soybean”

✓ located verbatim in the source · title, characters 41–48 · show in text ↑
e0

“increasing ozone concentration is highly correlated with increases in the metabolic and genomic components of antioxidant metabolism, regardless of carbon dioxide concentration environment”

✓ located verbatim in the source · abstract, characters 3085–3273 · show in text ↑
Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Increasing ozone correlated with increased genomic antioxidant components regardless of carbon dioxide environment.

Taxon
soybeanGlycine maxt0
Treatment
increasing ozone concentratione0
Outcome
genomic components of antioxidant metabolisme0
Direction
increasese0
Qualifier
regardless of carbon dioxide concentration environmente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“soybean”

✓ located verbatim in the source · title, characters 41–48 · show in text ↑
e0

“increasing ozone concentration is highly correlated with increases in the metabolic and genomic components of antioxidant metabolism, regardless of carbon dioxide concentration environment”

✓ located verbatim in the source · abstract, characters 3085–3273 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Elevated carbon dioxide dampened the antioxidant response to increasing ozone.

Taxon
soybeanGlycine maxt0
Treatment
elevated carbon dioxide concentratione0
Outcome
response to increasing ozone concentratione0
Direction
dampenede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“soybean”

✓ located verbatim in the source · title, characters 41–48 · show in text ↑
e0

“the response to increasing ozone concentration was dampened at elevated carbon dioxide concentration”

✓ located verbatim in the source · abstract, characters 3284–3384 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

Higher ozone may upregulate respiratory metabolism, supplying energy and carbon for detoxification and repair.

Taxon
soybeanGlycine maxt0
Treatment
higher ozone concentratione0
Outcome
respiratory metabolisme0
Direction
up regulatione0
Qualifier
supply energy and carbon for detoxification and repair of cellular damagee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“soybean”

✓ located verbatim in the source · title, characters 41–48 · show in text ↑
e0

“evidence suggesting an up regulation of respiratory metabolism at higher ozone concentration, which would supply energy and carbon for detoxification and repair of cellular damage”

✓ located verbatim in the source · abstract, characters 3407–3586 · show in text ↑

ozone · quality: phytochemicals · Glycine max (soybean)Results differ

6 papers: 2 positive, 4 negative or no effect

1 paper in the same direction as this paper · 4 in the opposite direction

  1. positive
  2. no effect
  3. no effect

2 papers more in this group

See all 6 papers →

co2 · quality: phytochemicals · Glycine max (soybean)Positive and negative results

3 papers: 1 positive, 2 negative or no effect

1 paper in the same direction as this paper · 1 in the opposite direction

  1. positive
  2. negative
See all 3 papers →

co2 · physiology: antioxidant enzymes · Glycine max (soybean)Positive and negative results

6 papers: 4 positive, 2 negative or no effect

3 papers in the same direction as this paper · 2 in the opposite direction

  1. negative
  2. negative
  3. positive

2 papers more in this group

See all 6 papers →

co2 · molecular: expression · Glycine max (soybean)Positive and negative results

11 papers: 3 positive, 8 negative or no effect

7 papers in the same direction as this paper · 3 in the opposite direction

  1. positive
  2. positive
  3. positive

7 papers more in this group

See all 11 papers →

co2 · molecular: metabolites · Glycine max (soybean)Positive and negative results

23 papers: 15 positive, 8 negative or no effect

7 papers in the same direction as this paper · 15 in the opposite direction

  1. positive
  2. positive
  3. positive

19 papers more in this group

See all 23 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.