Paper · 2026 · Frontiers in Microbiology

Phosphate-solubilizing Bacillus subtilis Y31 promotes cucumber growth and yield: insights from rhizosphere microbiomics and bacterial genomics

Yu Fu; Kaixin Lin; Bo Cheng; et al.

9
claims
19
verbatim quotes
2
citations
4
research areas
✓
Open access · cc-by

Abstract

Phosphate-solubilizing bacteria (PSB) play a vital role in sustainable agriculture by enhancing plant growth and improving crop yield. In intensive cucumber ( Cucumis sativus L.) cultivation systems, soil degradation commonly occurs, making the optimization of phosphorus availability a key strategy for increasing production. However, studies examining the growth-promoting effects of PSB in cucumber remain limited. In this study, we isolated a novel PSB strain, Y31, from cucumber rhizosphere soil and identified it as Bacillus subtilis . Strain Y31 demonstrated the ability to solubilize calcium phytate and calcium phosphate, secrete multiple enzymes, produce siderophores, and exhibit antagonistic activity against pathogenic fungi. Inoculation with Y31 significantly promoted cucumber growth, increasing greenhouse yield by 35.30%. Notably, Y31 application increased soil available phosphorus and altered the abundance of soil fungal community. It reduced the relative abundance of Botryotrichum and Chrysosporium , while promoting the relative abundance of the Penicillium genus. Genome sequencing of B. subtilis Y31 revealed the presence of genes involved in phosphorus cycling, carbohydrate-active enzymes, and the biosynthesis of 10 secondary metabolites. Together, these findings indicated that B. subtilis Y31 enhanced cucumber growth and yield by improving phosphorus availability, modulating microbial community structure, and carrying gene clusters linked to phosphorus solubilization and plant growth promotion. Therefore, this study provided a basis for the efficient utilization of phosphorus resources and supported the development of sustainable agricultural practices.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 9

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Inoculation with Y31 significantly promoted cucumber growth.

Taxon
cucumberCucumis sativuse0
Treatment
Inoculation with Y31e0
Interactor
Y31e0symbiont
Outcome
growthe0
Direction
promotede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucumis sativus
Cucumis sativus · TaxonH. Zell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Inoculation with Y31 significantly promoted cucumber growth”

✓ located verbatim in the source · abstract, characters 739–798 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Inoculation with Y31 increased greenhouse cucumber yield by 35.30%.

Taxon
cucumberCucumis sativuse0
Treatment
Inoculation with Y31e1
Interactor
Y31e1symbiont
Outcome
greenhouse yielde1
Direction
increasinge1
Value
35.30%e1
Setting
greenhousee1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucumis sativus
Cucumis sativus · TaxonH. Zell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“intensive cucumber”

✓ located verbatim in the source · abstract, characters 138–156 · show in text ↑
e1

“Inoculation with Y31 significantly promoted cucumber growth, increasing greenhouse yield by 35.30%”

✓ located verbatim in the source · abstract, characters 739–837 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Y31 application increased soil available phosphorus.

Taxon
cucumberCucumis sativuse0
Treatment
Y31 applicatione1
Interactor
Y31e1symbiont
Outcome
soil available phosphoruse1
Direction
increasede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucumis sativus
Cucumis sativus · TaxonH. Zell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“intensive cucumber”

✓ located verbatim in the source · abstract, characters 138–156 · show in text ↑
e1

“Y31 application increased soil available phosphorus”

✓ located verbatim in the source · abstract, characters 848–899 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Y31 application reduced the relative abundance of Botryotrichum and Chrysosporium in soil fungi.

Taxon
cucumberCucumis sativuse0
Treatment
Y31 applicatione2
Outcome
relative abundance of Botryotrichum and Chrysosporiume1
Direction
reducede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucumis sativus
Cucumis sativus · TaxonH. Zell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“intensive cucumber”

✓ located verbatim in the source · abstract, characters 138–156 · show in text ↑
e1

“It reduced the relative abundance of Botryotrichum and Chrysosporium”

✓ located verbatim in the source · abstract, characters 952–1020 · show in text ↑
e2

“Notably, Y31 application increased soil available phosphorus and altered the abundance of soil fungal community”

✓ located verbatim in the source · abstract, characters 839–950 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Y31 application promoted the relative abundance of the Penicillium genus in soil fungi.

Taxon
cucumberCucumis sativuse0
Treatment
Y31 applicatione2
Outcome
relative abundance of the Penicillium genuse1
Direction
promotinge1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucumis sativus
Cucumis sativus · TaxonH. Zell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“intensive cucumber”

✓ located verbatim in the source · abstract, characters 138–156 · show in text ↑
e1

“while promoting the relative abundance of the Penicillium genus”

✓ located verbatim in the source · abstract, characters 1023–1086 · show in text ↑
e2

“Notably, Y31 application increased soil available phosphorus and altered the abundance of soil fungal community”

✓ located verbatim in the source · abstract, characters 839–950 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The B. subtilis Y31 genome carries genes involved in phosphorus cycling.

Taxon
cucumberCucumis sativuse0
Interactor
B. subtilis Y31Bacillus subtilise1symbiont
Outcome
genes involved in phosphorus cyclinge1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucumis sativus
Cucumis sativus · TaxonH. Zell · CC BY-SA 3.0 · Wikimedia Commons ↗
Bacillus subtilis
Bacillus subtilis · InteractorY tambe (original uploader) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“intensive cucumber”

✓ located verbatim in the source · abstract, characters 138–156 · show in text ↑
e1

“Genome sequencing of B. subtilis Y31 revealed the presence of genes involved in phosphorus cycling”

✓ located verbatim in the source · abstract, characters 1088–1186 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The B. subtilis Y31 genome encodes biosynthesis of 10 secondary metabolites.

Taxon
cucumberCucumis sativuse0
Outcome
biosynthesis of 10 secondary metabolitese1
Value
10e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucumis sativus
Cucumis sativus · TaxonH. Zell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“intensive cucumber”

✓ located verbatim in the source · abstract, characters 138–156 · show in text ↑
e1

“the biosynthesis of 10 secondary metabolites”

✓ located verbatim in the source · abstract, characters 1221–1265 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Strain Y31 solubilized calcium phytate and calcium phosphate.

Taxon
cucumberCucumis sativuse0
Interactor
Strain Y31e1symbiont
Outcome
ability to solubilize calcium phytate and calcium phosphatee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucumis sativus
Cucumis sativus · TaxonH. Zell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“intensive cucumber”

✓ located verbatim in the source · abstract, characters 138–156 · show in text ↑
e1

“Strain Y31 demonstrated the ability to solubilize calcium phytate and calcium phosphate, secrete multiple enzymes, produce siderophores, and exhibit antagonistic activity against pathogenic fungi”

✓ located verbatim in the source · abstract, characters 542–737 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Strain Y31 showed antagonistic activity against pathogenic fungi.

Taxon
cucumberCucumis sativuse0
Interactor
pathogenic fungie1pathogen
Second interactor
Strain Y31e1biocontrol_agent
Outcome
antagonistic activitye1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucumis sativus
Cucumis sativus · TaxonH. Zell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“intensive cucumber”

✓ located verbatim in the source · abstract, characters 138–156 · show in text ↑
e1

“Strain Y31 demonstrated the ability to solubilize calcium phytate and calcium phosphate, secrete multiple enzymes, produce siderophores, and exhibit antagonistic activity against pathogenic fungi”

✓ located verbatim in the source · abstract, characters 542–737 · show in text ↑

inoculation · yield · Cucumis sativus (cucumber)Positive and negative results

56 papers: 49 positive, 7 negative or no effect

48 papers in the same direction as this paper · 7 in the opposite direction

  1. negative
  2. no effect
  3. negative

52 papers more in this group

See all 56 papers →

inoculation · growth · Cucumis sativus (cucumber)Positive and negative results

121 papers: 109 positive, 12 negative or no effect

108 papers in the same direction as this paper · 12 in the opposite direction

  1. positive
  2. positive
  3. positive

117 papers more in this group

See all 121 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.