Paper · 2024 · Virology

Comparative analyses of three grapevine Pinot gris virus cDNA clones reveal insights into the pathological properties of different phylogroups

Dipendra Karki; Rita Musetti; Baozhong Meng

11
claims
25
verbatim quotes
3
citations
5
research areas
✓
Open access · cc-by

Abstract

Grapevine Pinot gris virus (GPGV) is an emerging grapevine virus associated with grapevine leaf mottling and deformation (GLMD) disease. Being a recently identified virus, the molecular biology, pathological properties, and etiological complexity of GPGV remain poorly studied. Previous research revealed that GPGV comprises genetically different variants, some encoding a larger movement protein (MP) and others a shorter MP due to a C/T polymorphic site in ORF2 encoding MP. Variants that encode the shorter MP are associated with severe disease, whereas variants encoding the longer MP are associated with mild or no symptoms. However, this has yet to be demonstrated experimentally. Here, we report the construction of a wildtype cDNA clone, pGPGV-SY, based on ON93-12, a local isolate from Syrah closely related to the variants encoding the larger MP. Surprisingly, our clone exhibited significantly faster replication and caused more severe disease symptoms than pRI::GPGV-lat, an Italian GPGV clone, with a longer MP and demonstrated similar efficacies with that of pRI::GPGV-vir, another Italian clone with a shorter MP. A single C to T mutation at the polymorphic site of pGPGV-SY resulted in a two-fold higher RNA accumulation in the grapevine. Findings from this work constitute a leap toward the long-standing and complex question pertaining to the relationship between GPGV variant groups and GLMD. Integrating findings from this work and those by others, we propose an updated model to explain the complex relationship between GPGV variants and GLMD. • GPGV isolates of Ontario, Canada encodes a longer movement protein. • The pGPGV-SY showed higher virus RNA accumulation than pRI::GPGV-lat although both encode longer form of movement protein. • A C to T mutation which modifies movement protein size also contributes in increased virus replication and pathogenicity. • The infection of GPGV impacts on virus RNA level, symptom development and recovery, symptom severity, budbursts and yield.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 11

Method / resourceobservedoriginal resultbasis n/a

Claim · model-written summary

A wildtype GPGV cDNA clone pGPGV-SY was constructed from the local Syrah isolate ON93-12.

Taxon
grapevine Pinot gris virusGrapevine Pinot gris virust0
Material
pGPGV-SYe0
Outcome
construction of a wildtype cDNA clonee0
Qualifier
based on ON93-12e0

Not reportedComparator

Verbatim

e0

“Here, we report the construction of a wildtype cDNA clone, pGPGV-SY, based on ON93-12, a local isolate from Syrah closely related to the variants encoding the larger MP.”

✓ located verbatim in the source · abstract, characters 687–856 · show in text ↑
t0

“grapevine Pinot gris virus”

✓ located verbatim in the source · title, characters 30–56 · show in text ↑
Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

pGPGV-SY replicated significantly faster than pRI::GPGV-lat.

Taxon
grapevine Pinot gris virusGrapevine Pinot gris virust0
Treatment
pGPGV-SYe1
Outcome
replicatione0
Direction
fastere0
Comparator
pRI::GPGV-late0

Verbatim

e0

“Surprisingly, our clone exhibited significantly faster replication and caused more severe disease symptoms than pRI::GPGV-lat, an Italian GPGV clone, with a longer MP and demonstrated similar efficacies with that of pRI::GPGV-vir, another Italian clone with a shorter MP.”

✓ located verbatim in the source · abstract, characters 857–1128 · show in text ↑
e1

“a wildtype cDNA clone, pGPGV-SY”

✓ located verbatim in the source · abstract, characters 723–754 · show in text ↑
t0

“grapevine Pinot gris virus”

✓ located verbatim in the source · title, characters 30–56 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

pGPGV-SY caused more severe disease symptoms than pRI::GPGV-lat.

Taxon
grapevineVitise2
Treatment
pGPGV-SYe1
Interactor
GPGVe0pathogen
Outcome
disease symptomse0
Direction
more severee0
Comparator
pRI::GPGV-late0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Surprisingly, our clone exhibited significantly faster replication and caused more severe disease symptoms than pRI::GPGV-lat, an Italian GPGV clone, with a longer MP and demonstrated similar efficacies with that of pRI::GPGV-vir, another Italian clone with a shorter MP.”

✓ located verbatim in the source · abstract, characters 857–1128 · show in text ↑
e1

“a wildtype cDNA clone, pGPGV-SY”

✓ located verbatim in the source · abstract, characters 723–754 · show in text ↑
e2

“A single C to T mutation at the polymorphic site of pGPGV-SY resulted in a two-fold higher RNA accumulation in the grapevine.”

✓ located verbatim in the source · abstract, characters 1129–1254 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

pGPGV-SY demonstrated efficacy similar to pRI::GPGV-vir.

Taxon
grapevine Pinot gris virusGrapevine Pinot gris virust0
Treatment
pGPGV-SYe1
Outcome
efficaciese0
Direction
similare0
Comparator
pRI::GPGV-vire0

Verbatim

e0

“Surprisingly, our clone exhibited significantly faster replication and caused more severe disease symptoms than pRI::GPGV-lat, an Italian GPGV clone, with a longer MP and demonstrated similar efficacies with that of pRI::GPGV-vir, another Italian clone with a shorter MP.”

✓ located verbatim in the source · abstract, characters 857–1128 · show in text ↑
e1

“a wildtype cDNA clone, pGPGV-SY”

✓ located verbatim in the source · abstract, characters 723–754 · show in text ↑
t0

“grapevine Pinot gris virus”

✓ located verbatim in the source · title, characters 30–56 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

A C to T mutation in pGPGV-SY produced two-fold higher RNA accumulation in grapevine.

Taxon
grapevine Pinot gris virusGrapevine Pinot gris virust0
Treatment
A single C to T mutatione0
Outcome
RNA accumulatione0
Direction
highere0
Value
two-folde0
Qualifier
in the grapevinee0

Not reportedComparator

Verbatim

e0

“A single C to T mutation at the polymorphic site of pGPGV-SY resulted in a two-fold higher RNA accumulation in the grapevine.”

✓ located verbatim in the source · abstract, characters 1129–1254 · show in text ↑
t0

“grapevine Pinot gris virus”

✓ located verbatim in the source · title, characters 30–56 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Ontario GPGV isolates encode a longer movement protein.

Taxon
GPGVe0
Gene
movement proteine0
Outcome
encodes a longer movement proteine0
Setting
Ontario, Canadae0

Verbatim

e0

“GPGV isolates of Ontario, Canada encodes a longer movement protein.”

✓ located verbatim in the source · abstract, characters 1567–1634 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

pGPGV-SY showed higher virus RNA accumulation than pRI::GPGV-lat despite both encoding longer movement proteins.

Taxon
grapevine Pinot gris virusGrapevine Pinot gris virust0
Treatment
pGPGV-SYe0
Outcome
virus RNA accumulatione0
Direction
highere0
Qualifier
although both encode longer form of movement proteine0
Comparator
pRI::GPGV-late0

Verbatim

e0

“The pGPGV-SY showed higher virus RNA accumulation than pRI::GPGV-lat although both encode longer form of movement protein.”

✓ located verbatim in the source · abstract, characters 1637–1759 · show in text ↑
t0

“grapevine Pinot gris virus”

✓ located verbatim in the source · title, characters 30–56 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

The C to T mutation modifying movement-protein size also increased pathogenicity.

Taxon
grapevineVitise1
Treatment
A C to T mutatione0
Interactor
GPGVe2pathogen
Outcome
pathogenicitye0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“A C to T mutation which modifies movement protein size also contributes in increased virus replication and pathogenicity.”

✓ located verbatim in the source · abstract, characters 1762–1883 · show in text ↑
e1

“A single C to T mutation at the polymorphic site of pGPGV-SY resulted in a two-fold higher RNA accumulation in the grapevine.”

✓ located verbatim in the source · abstract, characters 1129–1254 · show in text ↑
e2

“Grapevine Pinot gris virus (GPGV) is an emerging grapevine virus associated with grapevine leaf mottling and deformation (GLMD) disease.”

✓ located verbatim in the source · abstract, characters 0–136 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

GPGV infection affects virus RNA level, symptom development and recovery.

Taxon
grapevineVitise1
Treatment
infection of GPGVe0
Interactor
GPGVe0pathogen
Outcome
virus RNA level, symptom development and recoverye0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The infection of GPGV impacts on virus RNA level, symptom development and recovery, symptom severity, budbursts and yield.”

✓ located verbatim in the source · abstract, characters 1886–2008 · show in text ↑
e1

“Grapevine Pinot gris virus (GPGV) is an emerging grapevine virus associated with grapevine leaf mottling and deformation (GLMD) disease.”

✓ located verbatim in the source · abstract, characters 0–136 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

GPGV infection affects symptom severity, budbursts and yield.

Taxon
grapevineVitise1
Treatment
infection of GPGVe0
Interactor
GPGVe0pathogen
Outcome
symptom severity, budbursts and yielde0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The infection of GPGV impacts on virus RNA level, symptom development and recovery, symptom severity, budbursts and yield.”

✓ located verbatim in the source · abstract, characters 1886–2008 · show in text ↑
e1

“Grapevine Pinot gris virus (GPGV) is an emerging grapevine virus associated with grapevine leaf mottling and deformation (GLMD) disease.”

✓ located verbatim in the source · abstract, characters 0–136 · show in text ↑
Method / resourceauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors propose an updated model of the relationship between GPGV variants and GLMD.

Taxon
grapevineVitise1
Interactor
GPGVe0pathogen
Outcome
updated modele0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Integrating findings from this work and those by others, we propose an updated model to explain the complex relationship between GPGV variants and GLMD.”

✓ located verbatim in the source · abstract, characters 1412–1564 · show in text ↑
e1

“Grapevine Pinot gris virus (GPGV) is an emerging grapevine virus associated with grapevine leaf mottling and deformation (GLMD) disease.”

✓ located verbatim in the source · abstract, characters 0–136 · show in text ↑

loss of function · disease · VitisPositive and negative results

8 papers: 2 positive, 6 negative or no effect

5 papers in the same direction as this paper · 2 in the opposite direction

  1. positive
  2. positive
  3. negative

4 papers more in this group

See all 8 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.