Paper · 2023 · Frontiers in Microbiology

Effect of endophytic diazotroph Enterobacter roggenkampii ED5 on nitrogen-metabolism-related microecology in the sugarcane rhizosphere at different nitrogen levels

Dao-Jun Guo; Dong-Ping Li; Bin Yang; et al.

13
claims
37
verbatim quotes
26
citations
4
research areas
✓
Open access · cc-by

Abstract

Sugarcane is an important sugar and energy crop worldwide, requiring a large amount of nitrogen (N). However, excessive application of synthetic N fertilizer causes environmental pollution in farmland. Endophytic nitrogen-fixing bacteria (ENFB) provide N nutrition for plants through biological N fixation, thus reducing the need for chemical fertilizers. The present study investigated the effect of the N-fixing endophytic strain Enterobacter roggenkampii ED5 on phytohormone indole-3-acetic acid (IAA), N-metabolism enzyme activities, microbial community compositions, and N cycle genes in sugarcane rhizosphere soil at different N levels. Three levels of 15 N-urea, such as low N (0 kg/ha), medium N (150 kg/ha), and high N (300 kg/ha), were applied. The results showed that, after inoculating strain ED5, the IAA content in sugarcane leaves was significantly increased by 68.82% under low N condition at the seedling stage (60 days). The nitrate reductase (NR) activity showed a downward trend. However, the glutamine synthase (GS) and NADH-glutamate dehydrogenase (NADH-GDH) activities were significantly enhanced compared to the control under the high N condition, and the GS and NR genes had the highest expression at 180 and 120 days, respectively, at the low N level. The total N content in the roots, stems, and leaves of sugarcane was higher than the control. The 15 N atom % excess of sugarcane decreased significantly under medium N condition, indicating that the medium N level was conducive to N fixation in strain ED5. Metagenome analysis of sugarcane rhizosphere soil exhibited that the abundance of N-metabolizing microbial richness was increased under low and high N conditions after inoculation of strain ED5 at the genus level, while it was increased at the phylum level only under the low N condition. The LefSe (LDA > 2, p < 0.05) found that the N-metabolism-related differential microorganisms under the high N condition were higher than those under medium and low N conditions. It was also shown that the abundance of nifDHK genes was significantly increased after inoculation of ED5 at the medium N level, and other N cycle genes had high abundance at the high N level after inoculation of strain ED5. The results of this study provided a scientific reference for N fertilization in actual sugarcane production.

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Claims 13

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

ED5 increased leaf IAA 68.82% under low nitrogen at 60 days.

Taxon
sugarcanee0
Organ / stage
leavese0
Treatment
inoculating strain ED5e0
Interactor
strain ED5e0symbiont
Outcome
IAA contente0
Direction
increasede0
Value
68.82%e0
Qualifier
under low N condition at the seedling stage (60 days)e0

Not reportedComparator

Verbatim

e0

“after inoculating strain ED5, the IAA content in sugarcane leaves was significantly increased by 68.82% under low N condition at the seedling stage (60 days)”

✓ located verbatim in the source · abstract, characters 780–937 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Nitrate reductase activity trended downward after ED5 inoculation.

Taxon
sugarcanet0
Treatment
strain ED5e1
Gene
nitrate reductase (NR)e0
Outcome
nitrate reductase (NR) activitye0
Direction
downward trende0

Not reportedComparator

Verbatim

e0

“The nitrate reductase (NR) activity showed a downward trend”

✓ located verbatim in the source · abstract, characters 939–998 · show in text ↑
t0

“sugarcane”

✓ located verbatim in the source · title, characters 113–122 · show in text ↑
e1

“after inoculating strain ED5, the IAA content in sugarcane leaves was significantly increased by 68.82% under low N condition at the seedling stage (60 days)”

✓ located verbatim in the source · abstract, characters 780–937 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Glutamine synthase activity rose under high nitrogen.

Taxon
sugarcanet0
Treatment
strain ED5e1
Outcome
glutamine synthase (GS)e0
Direction
enhancede0
Qualifier
under the high N conditione0
Comparator
the controle0

Verbatim

e0

“the glutamine synthase (GS) and NADH-glutamate dehydrogenase (NADH-GDH) activities were significantly enhanced compared to the control under the high N condition”

✓ located verbatim in the source · abstract, characters 1009–1170 · show in text ↑
t0

“sugarcane”

✓ located verbatim in the source · title, characters 113–122 · show in text ↑
e1

“after inoculating strain ED5, the IAA content in sugarcane leaves was significantly increased by 68.82% under low N condition at the seedling stage (60 days)”

✓ located verbatim in the source · abstract, characters 780–937 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

NADH-glutamate dehydrogenase activity rose under high nitrogen.

Taxon
sugarcanet0
Treatment
strain ED5e1
Outcome
NADH-glutamate dehydrogenase (NADH-GDH) activitiese0
Direction
enhancede0
Qualifier
under the high N conditione0
Comparator
the controle0

Verbatim

e0

“the glutamine synthase (GS) and NADH-glutamate dehydrogenase (NADH-GDH) activities were significantly enhanced compared to the control under the high N condition”

✓ located verbatim in the source · abstract, characters 1009–1170 · show in text ↑
t0

“sugarcane”

✓ located verbatim in the source · title, characters 113–122 · show in text ↑
e1

“after inoculating strain ED5, the IAA content in sugarcane leaves was significantly increased by 68.82% under low N condition at the seedling stage (60 days)”

✓ located verbatim in the source · abstract, characters 780–937 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

GS expression peaked at 180 days under low nitrogen.

Taxon
sugarcanet0
Outcome
GSe0
Direction
higheste0
Value
180e0
Qualifier
at the low N levele0

Verbatim

e0

“the GS and NR genes had the highest expression at 180 and 120 days, respectively, at the low N level”

✓ located verbatim in the source · abstract, characters 1176–1276 · show in text ↑
t0

“sugarcane”

✓ located verbatim in the source · title, characters 113–122 · show in text ↑
e1

“after inoculating strain ED5, the IAA content in sugarcane leaves was significantly increased by 68.82% under low N condition at the seedling stage (60 days)”

✓ located verbatim in the source · abstract, characters 780–937 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

NR expression peaked at 120 days under low nitrogen.

Taxon
sugarcanet0
Outcome
NR genese0
Direction
higheste0
Value
120e0
Qualifier
at the low N levele0

Verbatim

e0

“the GS and NR genes had the highest expression at 180 and 120 days, respectively, at the low N level”

✓ located verbatim in the source · abstract, characters 1176–1276 · show in text ↑
t0

“sugarcane”

✓ located verbatim in the source · title, characters 113–122 · show in text ↑
e1

“after inoculating strain ED5, the IAA content in sugarcane leaves was significantly increased by 68.82% under low N condition at the seedling stage (60 days)”

✓ located verbatim in the source · abstract, characters 780–937 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Total nitrogen rose in sugarcane roots, stems and leaves.

Taxon
sugarcanee0
Organ / stage
roots, stems, and leavese0
Treatment
strain ED5e1
Outcome
total N contente0
Direction
highere0
Comparator
the controle0

Verbatim

e0

“The total N content in the roots, stems, and leaves of sugarcane was higher than the control”

✓ located verbatim in the source · abstract, characters 1278–1370 · show in text ↑
t0

“sugarcane”

✓ located verbatim in the source · title, characters 113–122 · show in text ↑
e1

“after inoculating strain ED5, the IAA content in sugarcane leaves was significantly increased by 68.82% under low N condition at the seedling stage (60 days)”

✓ located verbatim in the source · abstract, characters 780–937 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Sugarcane nitrogen isotope excess decreased under medium nitrogen.

Taxon
sugarcanee0
Treatment
strain ED5e1
Outcome
15 N atom % excesse0
Direction
decreasede0
Qualifier
under medium N conditione0

Not reportedComparator

Verbatim

e0

“The 15 N atom % excess of sugarcane decreased significantly under medium N condition”

✓ located verbatim in the source · abstract, characters 1372–1456 · show in text ↑
t0

“sugarcane”

✓ located verbatim in the source · title, characters 113–122 · show in text ↑
e1

“after inoculating strain ED5, the IAA content in sugarcane leaves was significantly increased by 68.82% under low N condition at the seedling stage (60 days)”

✓ located verbatim in the source · abstract, characters 780–937 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Rhizosphere nitrogen-metabolizing microbial richness rose at genus level under low and high nitrogen.

Taxon
sugarcanet0
Treatment
inoculation of strain ED5e0
Outcome
abundance of N-metabolizing microbial richnesse0
Direction
increasede0
Qualifier
under low and high N conditionse0

Not reportedComparator

Verbatim

e0

“the abundance of N-metabolizing microbial richness was increased under low and high N conditions after inoculation of strain ED5 at the genus level”

✓ located verbatim in the source · abstract, characters 1601–1748 · show in text ↑
t0

“sugarcane”

✓ located verbatim in the source · title, characters 113–122 · show in text ↑
e1

“after inoculating strain ED5, the IAA content in sugarcane leaves was significantly increased by 68.82% under low N condition at the seedling stage (60 days)”

✓ located verbatim in the source · abstract, characters 780–937 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Rhizosphere microbial richness rose at phylum level only under low nitrogen.

Taxon
sugarcanet0
Treatment
strain ED5e0
Outcome
N-metabolizing microbial richnesse0
Direction
increasede0
Qualifier
only under the low N conditione0

Not reportedComparator

Verbatim

e0

“the abundance of N-metabolizing microbial richness was increased under low and high N conditions after inoculation of strain ED5 at the genus level, while it was increased at the phylum level only under the low N condition”

✓ located verbatim in the source · abstract, characters 1601–1823 · show in text ↑
t0

“sugarcane”

✓ located verbatim in the source · title, characters 113–122 · show in text ↑
e1

“after inoculating strain ED5, the IAA content in sugarcane leaves was significantly increased by 68.82% under low N condition at the seedling stage (60 days)”

✓ located verbatim in the source · abstract, characters 780–937 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

High nitrogen had more differential nitrogen-metabolism microorganisms than medium or low nitrogen.

Taxon
sugarcanet0
Outcome
N-metabolism-related differential microorganismse0
Direction
highere0
Comparator
medium and low N conditionse0
Setting
high N conditione0

Verbatim

e0

“N-metabolism-related differential microorganisms under the high N condition were higher than those under medium and low N conditions”

✓ located verbatim in the source · abstract, characters 1870–2002 · show in text ↑
t0

“sugarcane”

✓ located verbatim in the source · title, characters 113–122 · show in text ↑
e1

“after inoculating strain ED5, the IAA content in sugarcane leaves was significantly increased by 68.82% under low N condition at the seedling stage (60 days)”

✓ located verbatim in the source · abstract, characters 780–937 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

ED5 significantly increased nifDHK abundance under medium nitrogen.

Taxon
sugarcanet0
Treatment
inoculation of ED5e0
Outcome
abundance of nifDHK genese0
Direction
increasede0
Qualifier
at the medium N levele0

Not reportedComparator

Verbatim

e0

“the abundance of nifDHK genes was significantly increased after inoculation of ED5 at the medium N level”

✓ located verbatim in the source · abstract, characters 2027–2131 · show in text ↑
t0

“sugarcane”

✓ located verbatim in the source · title, characters 113–122 · show in text ↑
e1

“after inoculating strain ED5, the IAA content in sugarcane leaves was significantly increased by 68.82% under low N condition at the seedling stage (60 days)”

✓ located verbatim in the source · abstract, characters 780–937 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Other nitrogen cycle genes were abundant under high nitrogen after ED5 inoculation.

Taxon
sugarcanet0
Outcome
other N cycle genese0
Direction
highe0
Qualifier
at the high N level after inoculation of strain ED5e0

Verbatim

e0

“other N cycle genes had high abundance at the high N level after inoculation of strain ED5”

✓ located verbatim in the source · abstract, characters 2137–2227 · show in text ↑
t0

“sugarcane”

✓ located verbatim in the source · title, characters 113–122 · show in text ↑
e1

“after inoculating strain ED5, the IAA content in sugarcane leaves was significantly increased by 68.82% under low N condition at the seedling stage (60 days)”

✓ located verbatim in the source · abstract, characters 780–937 · show in text ↑

inoculation · pest · Saccharum officinarum (sugarcane)Positive and negative results

10 papers: 7 positive, 3 negative or no effect

6 papers in the same direction as this paper · 3 in the opposite direction

  1. no effect
  2. negative
  3. no effect

6 papers more in this group

See all 10 papers →

inoculation · physiology: hormones · Saccharum officinarum (sugarcane)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.