Abstract
Receptor-like cytoplasmic kinases (RLCKs) play important roles in various developmental processes and stress responses in plants. Whereas, the detailed information of this family in cassava has not clear yet. In this study, A total of 322 MeRLCK genes were identified in the cassava genome, and they could be divided into twelve clades (Clades I-XII) according to their phylogenetic relationships. Most RLCK members in the same clade have similar characteristics and motif compositions. Over half of the RLCKs possess cis-elements in their promoters that respond to ABA, MeJA, defense reactions, and stress. Under Xpm11 infection, the expression levels of four genes show significant changes, suggesting their involvement in Xpm11 resistance. Two RLCK (MeRLCK11 and MeRLCK84) genes potentially involved in resistance to cassava bacterial blight were identified through VIGS experiments. This work laid the foundation for studying the function of the cassava RLCK genes, especially the genes related to pathogen resistance.
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Claims 6
Claim · model-written summary
322 MeRLCK genes were identified in the cassava genome.
- Taxon
- cassava
Manihot esculentae1 - Gene
- MeRLCKe1
- Outcome
- MeRLCK genese1
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“A total of 322 MeRLCK genes were identified in the cassava genome”
Claim · model-written summary
Most RLCK members in the same clade have similar characteristics and motif compositions.
- Taxon
- cassavaManihot esculentae1
- Gene
- RLCKe2
- Outcome
- similar characteristics and motif compositionse2
- Qualifier
- in the same cladee2
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“A total of 322 MeRLCK genes were identified in the cassava genome”
e2“Most RLCK members in the same clade have similar characteristics and motif compositions”
Claim · model-written summary
Over half of the cassava RLCK genes have promoter cis-elements that respond to ABA, MeJA, defense reactions and stress.
- Taxon
- cassavaManihot esculentae1
- Outcome
- cis-elements in their promoterse3
- Qualifier
- respond to ABA, MeJA, defense reactions, and stresse3
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“A total of 322 MeRLCK genes were identified in the cassava genome”
e3“Over half of the RLCKs possess cis-elements in their promoters that respond to ABA, MeJA, defense reactions, and stress”
Claim · model-written summary
Under Xpm11 infection, the expression levels of four cassava RLCK genes show significant changes.
- Taxon
- cassavaManihot esculentae1
- Treatment
- Xpm11 infectione4
- Interactor
- Xpm11e4pathogen
- Outcome
- expression levelse4
Not reportedComparatorDirection
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“A total of 322 MeRLCK genes were identified in the cassava genome”
e4“Under Xpm11 infection, the expression levels of four genes show significant changes, suggesting their involvement in Xpm11 resistance”
Claim · model-written summary
Two cassava RLCK genes, MeRLCK11 and MeRLCK84, are potentially involved in resistance to cassava bacterial blight, as shown by VIGS.
- Taxon
- cassavaManihot esculentae1
- Treatment
- VIGSe5
- Gene
- MeRLCK11 and MeRLCK84e5
- Outcome
- resistance to cassava bacterial blighte5
Not reportedComparatorDirection
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“A total of 322 MeRLCK genes were identified in the cassava genome”
e5“Two RLCK (MeRLCK11 and MeRLCK84) genes potentially involved in resistance to cassava bacterial blight were identified through VIGS experiments”
Claim · model-written summary
The cassava RLCK genes divide into twelve clades (Clades I-XII) by phylogenetic relationship.
- Taxon
- cassavaManihot esculentae1
- Outcome
- clades (Clades I-XII)e6
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“A total of 322 MeRLCK genes were identified in the cassava genome”
e6“they could be divided into twelve clades (Clades I-XII) according to their phylogenetic relationships”
The same questions in other papers
loss of function · disease · Manihot esculenta (cassava)Positive and negative results
5 papers in the same direction as this paper · 5 in the opposite direction
- negative
- negative
- negative
7 papers more in this group
See all 11 papers →Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.