Paper · 2020 · Scientific Reports

Responses of AG1 and AG2 QTL introgression lines and seed pre-treatment on growth and physiological processes during anaerobic germination of rice under flooding

Satyen Mondal; M. Iqbal R. Khan; Frederickson Entila; et al.

17
claims
34
verbatim quotes
49
citations
3
research areas
✓
Open access · cc-by

Abstract

Rice seeds germinating in flooded soils encounter hypoxia or even anoxia leading to poor seed germination and crop establishment. Introgression of AG1 and AG2 QTLs associated with tolerance of flooding during germination, together with seed pre-treatment via hydro-priming or presoaking can enhance germination and seedling growth in anaerobic soils. This study assessed the performance of elite lines incorporating AG1, AG2 and their combination when directly seeded in flooded soils using dry seeds. The QTLs were in the background of two popular varieties PSB Rc82 and Ciherang-Sub1, evaluated along with the donors Kho Hlan On (AG1) and Ma-Zhan Red (AG2) and recipient parents PSB Rc82 and Ciherang-Sub1. In one set of experiments conducted in the greenhouse, seedling emergence, growth, and carbohydrate mobilization from seeds were assessed. Metabolites associated with reactive oxygen species (ROS) scavenging including malondialdehyde (MDA) as a measure of lipid peroxidation, ascorbate, total phenolic concentration (TPC), and activities of ROS scavenging enzymes were quantified in seeds germinating under control (saturated) and flooded (10 cm) soils. In another set of experiments conducted in a natural field with 3-5 cm flooding depths, control and pretreated seeds of Ciherang-Sub1 introgression lines and checks were used. Flooding reduced seedling emergence of all genotypes, though emergence of AG1 + AG2 introgression lines was greater than the other AG lines. Soluble sugars increased, while starch concentration decreased gradually under flooding especially in the tolerant checks and in AG1 + AG2 introgression lines. Less lipid peroxidation and higher α-amylase activity, higher ascorbate (RAsA) and TPC were observed in the tolerant checks and in the AG1 + AG2 introgression lines. Lipid peroxidation correlated negatively with ascorbate, TPC, and with ROS scavengers. Seed hydro-priming or pre-soaking increased emergence by 7-10% over that of dry seeds. Introgression of AG2 and AG1 + AG2 QTLs with seed pretreatment showed 101-153% higher emergence over dry seeds of intolerant genotypes in the field. Lines carrying AG1 + AG2 QTLs showed higher α-amylase activity, leading to rapid starch degradation and increase in soluble sugars, ascorbate, and TPC, together leading to higher germination and seedling growth in flooded soils. Seed hydro-priming or pre-soaking for 24 h also improved traits associated with flooding tolerance. Combining tolerance with seed management could therefore, improve crop establishment in flooded soils and encourage large-scale adoption of direct seeded rice system.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 17

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Flooding reduced seedling emergence in all rice genotypes.

Treatment
Floodinge0
Outcome
seedling emergencee0
Direction
reducede0
Qualifier
all genotypese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Flooding reduced seedling emergence of all genotypes”

✓ located verbatim in the source · abstract, characters 1339–1391 · show in text ↑
t0

“Rice”

✓ located after whitespace/quote normalisation · title, characters 142–146 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

AG1 plus AG2 lines had greater emergence than other AG lines under flooding.

Material
AG1 + AG2 introgression linese0
Outcome
emergencee0
Direction
greatere0
Comparator
the other AG linese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“emergence of AG1 + AG2 introgression lines was greater than the other AG lines.”

✓ located verbatim in the source · abstract, characters 1400–1479 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 142–146 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Soluble sugars increased under flooding, especially in tolerant checks and AG1 plus AG2 lines.

Material
AG1 + AG2 introgression linese0
Treatment
floodinge0
Outcome
Soluble sugarse0
Direction
increasede0
Qualifier
especially in the tolerant checkse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Soluble sugars increased, while starch concentration decreased gradually under flooding especially in the tolerant checks and in AG1 + AG2 introgression lines.”

✓ located verbatim in the source · abstract, characters 1480–1639 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 142–146 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Starch concentration decreased gradually under flooding, especially in tolerant checks and AG1 plus AG2 lines.

Material
AG1 + AG2 introgression linese0
Treatment
floodinge0
Outcome
starch concentratione0
Direction
decreasede0
Qualifier
especially in the tolerant checkse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Soluble sugars increased, while starch concentration decreased gradually under flooding especially in the tolerant checks and in AG1 + AG2 introgression lines.”

✓ located verbatim in the source · abstract, characters 1480–1639 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 142–146 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Tolerant checks showed less lipid peroxidation.

Material
tolerant checkse0
Outcome
lipid peroxidatione0
Direction
Lesse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Less lipid peroxidation and higher α-amylase activity, higher ascorbate (RAsA) and TPC were observed in the tolerant checks and in the AG1 + AG2 introgression lines.”

✓ located verbatim in the source · abstract, characters 1640–1805 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 142–146 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

AG1 plus AG2 lines showed less lipid peroxidation.

Material
AG1 + AG2 introgression linese0
Outcome
lipid peroxidatione0
Direction
Lesse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Less lipid peroxidation and higher α-amylase activity, higher ascorbate (RAsA) and TPC were observed in the tolerant checks and in the AG1 + AG2 introgression lines.”

✓ located verbatim in the source · abstract, characters 1640–1805 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 142–146 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Tolerant checks showed higher alpha amylase activity, ascorbate and total phenolic concentration.

Material
tolerant checkse0
Outcome
α-amylase activity, higher ascorbate (RAsA) and TPCe0
Direction
highere0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Less lipid peroxidation and higher α-amylase activity, higher ascorbate (RAsA) and TPC were observed in the tolerant checks and in the AG1 + AG2 introgression lines.”

✓ located verbatim in the source · abstract, characters 1640–1805 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 142–146 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

AG1 plus AG2 lines showed higher alpha amylase activity, ascorbate and total phenolic concentration.

Material
AG1 + AG2 introgression linese0
Outcome
α-amylase activity, higher ascorbate (RAsA) and TPCe0
Direction
highere0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Less lipid peroxidation and higher α-amylase activity, higher ascorbate (RAsA) and TPC were observed in the tolerant checks and in the AG1 + AG2 introgression lines.”

✓ located verbatim in the source · abstract, characters 1640–1805 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 142–146 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Lipid peroxidation correlated negatively with ascorbate, total phenolics and ROS scavengers.

Compound
ascorbate, TPC, and with ROS scavengerse0
Outcome
Lipid peroxidatione0
Direction
negativelye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Lipid peroxidation correlated negatively with ascorbate, TPC, and with ROS scavengers.”

✓ located verbatim in the source · abstract, characters 1806–1892 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 142–146 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Hydro priming increased emergence by 7–10% over dry seeds.

Treatment
Seed hydro-priminge0
Outcome
emergencee0
Direction
increasede0
Value
7-10%e0
Comparator
dry seedse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Seed hydro-priming or pre-soaking increased emergence by 7-10% over that of dry seeds.”

✓ located verbatim in the source · abstract, characters 1893–1979 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 142–146 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Pre soaking increased emergence by 7–10% over dry seeds.

Treatment
pre-soakinge0
Outcome
emergencee0
Direction
increasede0
Value
7-10%e0
Comparator
dry seedse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Seed hydro-priming or pre-soaking increased emergence by 7-10% over that of dry seeds.”

✓ located verbatim in the source · abstract, characters 1893–1979 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 142–146 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

AG2 introgression with pretreatment gave 101–153% higher field emergence than dry intolerant seeds.

Treatment
AG2 and AG1 + AG2 QTLs with seed pretreatmente0
Outcome
emergencee0
Direction
highere0
Value
101-153%e0
Comparator
dry seeds of intolerant genotypese0
Setting
in the fielde0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Introgression of AG2 and AG1 + AG2 QTLs with seed pretreatment showed 101-153% higher emergence over dry seeds of intolerant genotypes in the field.”

✓ located verbatim in the source · abstract, characters 1980–2128 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 142–146 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

AG1 plus AG2 QTL introgression with pretreatment gave 101–153% higher field emergence than dry intolerant seeds.

Treatment
AG1 + AG2 QTLs with seed pretreatmente0
Outcome
emergencee0
Direction
highere0
Value
101-153%e0
Comparator
dry seeds of intolerant genotypese0
Setting
in the fielde0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Introgression of AG2 and AG1 + AG2 QTLs with seed pretreatment showed 101-153% higher emergence over dry seeds of intolerant genotypes in the field.”

✓ located verbatim in the source · abstract, characters 1980–2128 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 142–146 · show in text ↑
Mechanismobservedoriginal resultpositivemeasured

Claim · model-written summary

AG1 plus AG2 QTL lines showed higher amylase activity and rapid starch degradation, increasing soluble sugars, ascorbate and total phenolics.

Material
Lines carrying AG1 + AG2 QTLse0
Gene
α-amylasee0
Outcome
rapid starch degradation and increase in soluble sugars, ascorbate, and TPCe0
Qualifier
higher germination and seedling growth in flooded soilse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Lines carrying AG1 + AG2 QTLs showed higher α-amylase activity, leading to rapid starch degradation and increase in soluble sugars, ascorbate, and TPC, together leading to higher germination and seedling growth in flooded soils.”

✓ located verbatim in the source · abstract, characters 2129–2357 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 142–146 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Hydro priming for 24 hours improved flooding tolerance traits.

Treatment
Seed hydro-priminge0
Outcome
traits associated with flooding tolerancee0
Direction
improvede0
Qualifier
for 24 he0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Seed hydro-priming or pre-soaking for 24 h also improved traits associated with flooding tolerance.”

✓ located verbatim in the source · abstract, characters 2358–2457 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 142–146 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Pre soaking for 24 hours improved flooding tolerance traits.

Treatment
pre-soakinge0
Outcome
traits associated with flooding tolerancee0
Direction
improvede0
Qualifier
for 24 he0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Seed hydro-priming or pre-soaking for 24 h also improved traits associated with flooding tolerance.”

✓ located verbatim in the source · abstract, characters 2358–2457 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 142–146 · show in text ↑
Recommendationauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

Authors suggest combining tolerance and seed management to improve crop establishment in flooded soils.

Outcome
Combining tolerance with seed managemente0
Qualifier
improve crop establishment in flooded soilse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Combining tolerance with seed management could therefore, improve crop establishment in flooded soils”

✓ located verbatim in the source · abstract, characters 2458–2559 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 142–146 · show in text ↑

flooding · physiology: osmolytes · Oryza sativa (rice)Results differ

12 papers: 8 positive, 4 negative or no effect

7 papers in the same direction as this paper · 4 in the opposite direction

  1. positive
  2. negative
  3. negative

8 papers more in this group

See all 12 papers →

flooding · growth · Oryza sativa (rice)Positive and negative results

138 papers: 64 positive, 74 negative or no effect

73 papers in the same direction as this paper · 64 in the opposite direction

  1. negative
  2. positive
  3. positive

134 papers more in this group

See all 138 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.