Paper · 2019 · Nature Communications

The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice

Chunbo Miao; Zhen Wang; Lin Zhang; et al.

9
claims
18
verbatim quotes
188
citations
3
research areas
✓
Open access · cc-by

Abstract

The widespread agricultural problem of pre-harvest sprouting (PHS) could potentially be overcome by improving seed dormancy. Here, we report that miR156, an important grain yield regulator, also controls seed dormancy in rice. We found that mutations in one MIR156 subfamily enhance seed dormancy and suppress PHS with negligible effects on shoot architecture and grain size, whereas mutations in another MIR156 subfamily modify shoot architecture and increase grain size but have minimal effects on seed dormancy. Mechanistically, mir156 mutations enhance seed dormancy by suppressing the gibberellin (GA) pathway through de-represssion of the miR156 target gene Ideal Plant Architecture 1 (IPA1), which directly regulates multiple genes in the GA pathway. These results provide an effective method to suppress PHS without compromising productivity, and will facilitate breeding elite crop varieties with ideal plant architectures.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 9

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Mutations in one MIR156 subfamily enhanced seed dormancy.

Treatment
mutations in one MIR156 subfamilyt0e0
Gene
MIR156t0e0
Outcome
seed dormancyt0e0
Direction
enhancet0e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 92–96 · show in text ↑
e0

“mutations in one MIR156 subfamily enhance seed dormancy and suppress PHS with negligible effects on shoot architecture and grain size”

✓ located verbatim in the source · abstract, characters 241–374 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Mutations in one MIR156 subfamily suppressed preharvest sprouting.

Treatment
mutations in one MIR156 subfamilyt0e0
Gene
MIR156t0e0
Outcome
PHSt0e0
Direction
suppresst0e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 92–96 · show in text ↑
e0

“mutations in one MIR156 subfamily enhance seed dormancy and suppress PHS with negligible effects on shoot architecture and grain size”

✓ located verbatim in the source · abstract, characters 241–374 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Mutations in one MIR156 subfamily had negligible effects on shoot architecture and grain size.

Treatment
mutations in one MIR156 subfamilyt0e0
Outcome
shoot architecture and grain sizet0e0
Direction
negligible effectst0e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 92–96 · show in text ↑
e0

“mutations in one MIR156 subfamily enhance seed dormancy and suppress PHS with negligible effects on shoot architecture and grain size”

✓ located verbatim in the source · abstract, characters 241–374 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Mutations in another MIR156 subfamily modified shoot architecture.

Treatment
mutations in another MIR156 subfamilyt0e0
Outcome
shoot architecturet0e0
Direction
modifyt0e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 92–96 · show in text ↑
e0

“mutations in another MIR156 subfamily modify shoot architecture and increase grain size but have minimal effects on seed dormancy”

✓ located verbatim in the source · abstract, characters 384–513 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Mutations in another MIR156 subfamily increased grain size.

Treatment
mutations in another MIR156 subfamilyt0e0
Outcome
grain sizet0e0
Direction
increaset0e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 92–96 · show in text ↑
e0

“mutations in another MIR156 subfamily modify shoot architecture and increase grain size but have minimal effects on seed dormancy”

✓ located verbatim in the source · abstract, characters 384–513 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Mutations in another MIR156 subfamily had minimal effects on seed dormancy.

Treatment
mutations in another MIR156 subfamilyt0e0
Outcome
seed dormancyt0e0
Direction
minimal effectst0e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 92–96 · show in text ↑
e0

“mutations in another MIR156 subfamily modify shoot architecture and increase grain size but have minimal effects on seed dormancy”

✓ located verbatim in the source · abstract, characters 384–513 · show in text ↑
Mechanismobservedoriginal resultpositivemeasured

Claim · model-written summary

mir156 mutation enhanced dormancy through IPA1 de-repression and GA pathway suppression.

Gene
Ideal Plant Architecture 1 (IPA1)t0e0
Outcome
seed dormancyt0e0
Direction
enhancet0e0
Qualifier
suppressing the gibberellin (GA) pathwayt0e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 92–96 · show in text ↑
e0

“mir156 mutations enhance seed dormancy by suppressing the gibberellin (GA) pathway through de-represssion of the miR156 target gene Ideal Plant Architecture 1 (IPA1), which directly regulates multiple genes in the GA pathway”

✓ located verbatim in the source · abstract, characters 532–756 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

IPA1 directly regulates multiple GA pathway genes.

Gene
Ideal Plant Architecture 1 (IPA1)t0e0
Outcome
multiple genes in the GA pathwayt0e0
Qualifier
directly regulatest0e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 92–96 · show in text ↑
e0

“mir156 mutations enhance seed dormancy by suppressing the gibberellin (GA) pathway through de-represssion of the miR156 target gene Ideal Plant Architecture 1 (IPA1), which directly regulates multiple genes in the GA pathway”

✓ located verbatim in the source · abstract, characters 532–756 · show in text ↑
Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors present the mutations as a way to suppress PHS without reducing productivity.

Outcome
suppress PHS without compromising productivityt0e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 92–96 · show in text ↑
e0

“These results provide an effective method to suppress PHS without compromising productivity”

✓ located verbatim in the source · abstract, characters 758–849 · show in text ↑

loss of function · quality: postharvest · Oryza sativa (rice)Positive and negative results

13 papers: 6 positive, 7 negative or no effect

5 papers in the same direction as this paper · 7 in the opposite direction

  1. negative
  2. positive
  3. negative

9 papers more in this group

See all 13 papers →

loss of function · growth · Oryza sativa (rice)Positive and negative results

132 papers: 28 positive, 104 negative or no effect

27 papers in the same direction as this paper · 104 in the opposite direction

  1. negative
  2. negative
  3. negative

128 papers more in this group

See all 132 papers →

loss of function · yield · Oryza sativa (rice)Positive and negative results

134 papers: 62 positive, 72 negative or no effect

61 papers in the same direction as this paper · 72 in the opposite direction

  1. negative
  2. no effect
  3. positive

130 papers more in this group

See all 134 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.