Paper · 2019 · Environment International

Taxonomic and functional responses of soil microbial communities to slag-based fertilizer amendment in rice cropping systems

Suvendu Das; Hyo Suk Gwon; Muhammad Israr Khan; et al.

10
claims
20
verbatim quotes
66
citations
4
research areas
✓
Open access · cc-by-nc-nd

Abstract

The effective utilization of slag-based Silicon fertilizer (silicate fertilizer) in agriculture to improve crop productivity and to mitigate environmental consequences turns it into a high value added product in sustainable agriculture. Despite the integral role of soil microbiome in agricultural production and virtually all ecosystem processes, our understanding of the microbial role in ecosystem functions and agricultural productivity in response to the silicate fertilizer amendment is, however, elusive. In this study, using 16S rRNA gene and ITS amplicon illumina sequencing and a functional gene microarray, i.e., GeoChip 5, we report for the first time the responses of soil microbes and their functions to the silicate fertilizer amendment in two different geographic races of Oryza sativa var. Japonica (Japonica rice) and var. Indica (Indica rice). The silicate fertilizer significantly increased soil pH, photosynthesis rate, nutrient (i.e., C, Si, Fe, P) availability and crop productivity, but decreased N availability and CH4 and N2O emissions. Moreover, the silicate fertilizer application significantly altered soil bacterial and fungal community composition and increased abundance of functional genes involved in labile C degradation, C and N fixation, phosphorus utilization, CH4 oxidation, and metal detoxification, whereas those involve in CH4 production and denitrification were decreased. The changes in the taxonomic and functional structure of microbial communities by the silicate fertilizer were mostly regulated by soil pH, plant photosynthesis, and nutrient availability. This study provides novel insights into our understanding of microbial functional processes in response to the silicate fertilizer amendment in rice cropping systems and has important implications for sustainable rice production.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by-nc-nd. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 10

Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Silicate fertilizer significantly increased soil pH in rice cropping systems.

Taxon
Oryza sativaOryza sativae0
Treatment
silicate fertilizere1
Outcome
soil pHe1
Direction
increasede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two different geographic races of Oryza sativa var. Japonica (Japonica rice) and var. Indica (Indica rice)”

✓ located verbatim in the source · abstract, characters 755–861 · show in text ↑
e1

“The silicate fertilizer significantly increased soil pH”

✓ located verbatim in the source · abstract, characters 863–918 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Silicate fertilizer significantly increased photosynthesis rate in rice.

Taxon
Oryza sativaOryza sativae0
Treatment
silicate fertilizere1
Outcome
photosynthesis ratee1
Direction
increasede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two different geographic races of Oryza sativa var. Japonica (Japonica rice) and var. Indica (Indica rice)”

✓ located verbatim in the source · abstract, characters 755–861 · show in text ↑
e1

“The silicate fertilizer significantly increased soil pH, photosynthesis rate”

✓ located verbatim in the source · abstract, characters 863–939 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Silicate fertilizer significantly increased crop productivity of rice.

Taxon
Oryza sativaOryza sativae0
Treatment
silicate fertilizere1
Outcome
crop productivitye1
Direction
increasede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two different geographic races of Oryza sativa var. Japonica (Japonica rice) and var. Indica (Indica rice)”

✓ located verbatim in the source · abstract, characters 755–861 · show in text ↑
e1

“The silicate fertilizer significantly increased soil pH, photosynthesis rate, nutrient (i.e., C, Si, Fe, P) availability and crop productivity”

✓ located verbatim in the source · abstract, characters 863–1005 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Silicate fertilizer significantly increased nutrient (C, Si, Fe, P) availability in rice soils.

Taxon
Oryza sativaOryza sativae0
Treatment
silicate fertilizere1
Outcome
nutrient (i.e., C, Si, Fe, P) availabilitye1
Direction
increasede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two different geographic races of Oryza sativa var. Japonica (Japonica rice) and var. Indica (Indica rice)”

✓ located verbatim in the source · abstract, characters 755–861 · show in text ↑
e1

“The silicate fertilizer significantly increased soil pH, photosynthesis rate, nutrient (i.e., C, Si, Fe, P) availability and crop productivity”

✓ located verbatim in the source · abstract, characters 863–1005 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Silicate fertilizer decreased N availability in rice soils.

Taxon
Oryza sativaOryza sativae0
Treatment
silicate fertilizere1
Outcome
N availabilitye1
Direction
decreasede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two different geographic races of Oryza sativa var. Japonica (Japonica rice) and var. Indica (Indica rice)”

✓ located verbatim in the source · abstract, characters 755–861 · show in text ↑
e1

“The silicate fertilizer significantly increased soil pH, photosynthesis rate, nutrient (i.e., C, Si, Fe, P) availability and crop productivity, but decreased N availability and CH4 and N2O emissions”

✓ located verbatim in the source · abstract, characters 863–1061 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Silicate fertilizer decreased CH4 and N2O emissions from rice cropping systems.

Taxon
Oryza sativaOryza sativae0
Treatment
silicate fertilizere1
Outcome
CH4 and N2O emissionse1
Direction
decreasede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two different geographic races of Oryza sativa var. Japonica (Japonica rice) and var. Indica (Indica rice)”

✓ located verbatim in the source · abstract, characters 755–861 · show in text ↑
e1

“The silicate fertilizer significantly increased soil pH, photosynthesis rate, nutrient (i.e., C, Si, Fe, P) availability and crop productivity, but decreased N availability and CH4 and N2O emissions”

✓ located verbatim in the source · abstract, characters 863–1061 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Silicate fertilizer altered soil bacterial and fungal community composition.

Taxon
Oryza sativaOryza sativae0
Treatment
silicate fertilizer applicatione1
Outcome
soil bacterial and fungal community compositione1
Direction
alterede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two different geographic races of Oryza sativa var. Japonica (Japonica rice) and var. Indica (Indica rice)”

✓ located verbatim in the source · abstract, characters 755–861 · show in text ↑
e1

“the silicate fertilizer application significantly altered soil bacterial and fungal community composition and increased abundance of functional genes involved in labile C degradation, C and N fixation, phosphorus utilization, CH4 oxidation, and metal detoxification, whereas those involve in CH4 production and denitrification were decreased”

✓ located verbatim in the source · abstract, characters 1073–1414 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Silicate fertilizer increased the abundance of functional genes for labile C degradation, C and N fixation, P utilization, CH4 oxidation and metal detoxification.

Taxon
Oryza sativaOryza sativae0
Treatment
silicate fertilizer applicatione1
Outcome
abundance of functional genese1
Direction
increasede1
Qualifier
labile C degradation, C and N fixation, phosphorus utilization, CH4 oxidation, and metal detoxificatione1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two different geographic races of Oryza sativa var. Japonica (Japonica rice) and var. Indica (Indica rice)”

✓ located verbatim in the source · abstract, characters 755–861 · show in text ↑
e1

“the silicate fertilizer application significantly altered soil bacterial and fungal community composition and increased abundance of functional genes involved in labile C degradation, C and N fixation, phosphorus utilization, CH4 oxidation, and metal detoxification, whereas those involve in CH4 production and denitrification were decreased”

✓ located verbatim in the source · abstract, characters 1073–1414 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Silicate fertilizer decreased functional genes for CH4 production and denitrification.

Taxon
Oryza sativaOryza sativae0
Treatment
silicate fertilizer applicatione1
Outcome
CH4 production and denitrificatione1
Direction
decreasede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two different geographic races of Oryza sativa var. Japonica (Japonica rice) and var. Indica (Indica rice)”

✓ located verbatim in the source · abstract, characters 755–861 · show in text ↑
e1

“the silicate fertilizer application significantly altered soil bacterial and fungal community composition and increased abundance of functional genes involved in labile C degradation, C and N fixation, phosphorus utilization, CH4 oxidation, and metal detoxification, whereas those involve in CH4 production and denitrification were decreased”

✓ located verbatim in the source · abstract, characters 1073–1414 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Changes in microbial community structure under silicate fertilizer were mostly regulated by soil pH, plant photosynthesis and nutrient availability.

Taxon
Oryza sativaOryza sativae0
Treatment
silicate fertilizere1
Outcome
taxonomic and functional structure of microbial communitiese1
Qualifier
mostly regulated by soil pH, plant photosynthesis, and nutrient availabilitye1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two different geographic races of Oryza sativa var. Japonica (Japonica rice) and var. Indica (Indica rice)”

✓ located verbatim in the source · abstract, characters 755–861 · show in text ↑
e1

“The changes in the taxonomic and functional structure of microbial communities by the silicate fertilizer were mostly regulated by soil pH, plant photosynthesis, and nutrient availability”

✓ located verbatim in the source · abstract, characters 1416–1603 · show in text ↑

silicate(4-) · physiology: photosynthesis · Oryza sativa (rice)Positive and negative results

3 papers: 2 positive, 1 negative or no effect

1 paper in the same direction as this paper · 1 in the opposite direction

  1. no effect
  2. positive
See all 3 papers →

silicate(4-) · yield · Oryza sativa (rice)Positive and negative results

47 papers: 44 positive, 3 negative or no effect

43 papers in the same direction as this paper · 2 in the opposite direction · 1 reporting no difference from an alternative

  1. no effect
  2. no effect
  3. no effect

43 papers more in this group

See all 47 papers →

silicate(4-) · environment: emissions · Oryza sativa (rice)Results agree

7 papers: 7 positive, 0 negative or no effect

6 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

3 papers more in this group

See all 7 papers →

fertilization · environment: emissions · Oryza sativa (rice)Results differ

108 papers: 73 positive, 35 negative or no effect

72 papers in the same direction as this paper · 35 in the opposite direction

  1. negative
  2. no effect
  3. negative

104 papers more in this group

See all 108 papers →

fertilization · physiology: photosynthesis · Oryza sativa (rice)Positive and negative results

83 papers: 78 positive, 5 negative or no effect

77 papers in the same direction as this paper · 5 in the opposite direction

  1. negative
  2. negative
  3. negative

79 papers more in this group

See all 83 papers →

fertilization · yield · Oryza sativa (rice)Positive and negative results

3,455 papers: 3,183 positive, 272 negative or no effect

3,182 papers in the same direction as this paper · 207 in the opposite direction · 65 reporting no difference from an alternative

  1. positive
  2. no effect
  3. no effect

3,451 papers more in this group

See all 3,455 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.