Paper · 2014 · Padua@research (University of Padova)

ASSOCIATION OF THE EXPRESSION LEVELS OF TRANSCRIPTION FACTORS WITH THE PHENOTYPES AND GENOTYPES OF PEACH FRUITS THAT DIFFER IN THEIR QUALITATIVE CHARACTERISTICS

Abdur Rahim

15
claims
25
verbatim quotes
0
citations
4
research areas
✓
Open access

Abstract

Anthocyanins are plant bioactive compounds that control color of many vegetables, flowers, fruit, roots and other plant parts. In peach [Prunus persica (L.) Batsch], color is a key determinant for fruit quality and depends by flovonoids including anthocyanins. These bioactive molecules have potential benefits to human health including protection against cancer, cardiovascular diseases, inflammation and other chronic diseases. The R2R3-MYB transcription factors (TFs) control the expression of genes for the synthesis of anthocyanin pigments with the help of co-activators belonging to the basic-helix-loop-helix (bHLH) and WD40 repeat family. In the peach genome, through this study three MYB10-like (MYB10.1, MYB10.2 and MYB10.3) and three bHLH-like (bHLH3, bHLH33 and GL3) TFs were identified as best candidates to be the regulators of the anthocyanin accumulation in peach. Among these MYB10s, MYB10.1 is the highly expressed gene in ripe peach fruits. The accumulation of anthocyanins in yellow flesh peach fruits is highest in the peel, abundant in the part of the mesocarp surrounding the stone and lowest in the mesocarp. The expression of MYB10.1 and MYB10.3 genes were correlated with anthocyanin levels of different peach parts. They have also positive correlation with the key structural genes of the anthocyanin pathway, like chalcone synthase (CHS), flavanone-3?-hydroxylase (F3H), dihydroflavonol 4-reductase (DFR) and UDP-glucose:flavonoid-3-O-glucosyltransferase (UFGT). Functions of peach MYB10s were tested in tobacco and shown to activate key genes in the anthocyanin pathway when bHLHs were co-expressed as partners. Over-expression of MYB10.1/bHLH3 and MYB10.3/bHLH3 activated anthocyanin production by up-regulating NtCHS, NtDFR and NtUFGT while other combinations were not effective. To better understand the role of MYB10.1 in anthocyanin synthesis during peach ripening, its coding sequence has been constitutively expressed in tobacco transgenic plants. Its over-expression induce anthocyanin pigmentation in the reproductive parts of transgenic tobacco lines through the up-regulation of transcript levels of many important genes involved in the anthocyanin biosynthetic pathway like phenylalanineammonia-lyase (NtPAL), NtCHS, chalcone isomerase (NtCHI), NtF3H, NtDFR, anthocyanin synthase (NtANS) and NtUFGT. The pigment accumulation was always limited to reproductive parts and never present in the vegetative part like stem and leaves. Besides the regulation of anthocyanin biosynthesis, the ectopic expression of MYB10.1 leads to two different types of phenotype in transgenic as compared to WT tobacco. The strong phenotype, called type-I, is characterized by irregular leaf shape and size, reduced plant height, stamens with reduced filament length and non-dehiscing anthers, reduced pistil length, no nectary gland formation and reduced capsule development but pigmented reproductive parts including androecium, gynoecium and petals. On the contrary, so-called type-II plants, have a mild phenotype with regular plant growth and development, but purple seed coats. Surprisingly, the over-expression of MYB10.1 altered the floral development in transgenic tobacco lines. In type-I transgenic plants, the over-expression of peach MYB10.1 leads to down-regulation of NtMYB305, a gene similar, but not orthologous, to MYB10.1, which is required for floral development. Moreover, MYB10.1 up-regulates the expression of jasmonic acid (JA) biosynthesis (allene oxide synthase, NtAOS) and signaling (NtJAZd) pathway genes as well as 1-aminocyclopropane-1-carboxylate oxidase (NtACO), a key gene in ethylene synthesis. Furthermore, NECTARIN1 (NtNCE1) that is known to be involved in nectary gland formation, was repressed since its transcription is regulated by NtMYB305. On the contrary, type-II transgenic plants showed opposite results for NtMYB305, NtAOS, NtJAZd and NtNEC1. Therefore, it can be concluded that the over-expression of peach MYB10.1 in tobacco not only regulates flavonoid biosynthesis in the reproductive parts but also affects (directly and/or indirectly) other process like vegetative and reproductive development. These new findings will promote further investigation to elucidate more diverse role of R2R3-MYB TFs. Furthermore, they will promote more and better insights on the regulation of anthocyanin biosynthesis and will aid fruit breeders to introduce new peach cultivars with higher antioxidant level as well as colored fruit.

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Claims 15

Observationobservedoriginal resultmeasured

Claim · model-written summary

Three peach MYB10-like and three bHLH-like factors were identified as candidate regulators of anthocyanin accumulation.

Gene
MYB10.1, MYB10.2 and MYB10.3e0
Outcome
best candidates to be the regulators of the anthocyanin accumulatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Prunus persica
Prunus persica · TaxonAllagash Brewing · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“In the peach genome, through this study three MYB10-like (MYB10.1, MYB10.2 and MYB10.3) and three bHLH-like (bHLH3, bHLH33 and GL3) TFs were identified as best candidates to be the regulators of the anthocyanin accumulation in peach.”

✓ located verbatim in the source · abstract, characters 647–880 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

MYB10.1 was the most highly expressed MYB10 in ripe peach fruit.

Organ / stage
ripe peach fruitse0
Gene
MYB10.1e0
Outcome
highly expressed genee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Prunus persica
Prunus persica · TaxonAllagash Brewing · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“Among these MYB10s, MYB10.1 is the highly expressed gene in ripe peach fruits.”

✓ located verbatim in the source · abstract, characters 881–959 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

In yellow flesh peach, anthocyanins were highest in peel, abundant near the stone and lowest in mesocarp.

Organ / stage
peele0
Outcome
accumulation of anthocyaninse0
Direction
higheste0
Qualifier
lowest in the mesocarpe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Prunus persica
Prunus persica · TaxonAllagash Brewing · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“The accumulation of anthocyanins in yellow flesh peach fruits is highest in the peel, abundant in the part of the mesocarp surrounding the stone and lowest in the mesocarp.”

✓ located verbatim in the source · abstract, characters 960–1132 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Peach MYB10.1 and MYB10.3 expression correlated with anthocyanin levels in fruit parts.

Organ / stage
different peach partse0
Gene
MYB10.1 and MYB10.3e0
Outcome
anthocyanin levelse0
Direction
correlatede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Prunus persica
Prunus persica · TaxonAllagash Brewing · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“The expression of MYB10.1 and MYB10.3 genes were correlated with anthocyanin levels of different peach parts.”

✓ located verbatim in the source · abstract, characters 1133–1242 · show in text ↑
Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

MYB10.1 and MYB10.3 expression correlated positively with structural anthocyanin pathway genes.

Gene
chalcone synthase (CHS)e0
Outcome
key structural genes of the anthocyanin pathwaye0
Direction
positive correlatione0
Qualifier
MYB10.1 and MYB10.3e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Prunus persica
Prunus persica · TaxonAllagash Brewing · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“They have also positive correlation with the key structural genes of the anthocyanin pathway, like chalcone synthase (CHS), flavanone-3?-hydroxylase (F3H), dihydroflavonol 4-reductase (DFR) and UDP-glucose:flavonoid-3-O-glucosyltransferase (UFGT).”

✓ located verbatim in the source · abstract, characters 1243–1490 · show in text ↑
e1

“The expression of MYB10.1 and MYB10.3 genes were correlated with anthocyanin levels of different peach parts.”

✓ located verbatim in the source · abstract, characters 1133–1242 · show in text ↑
t0

“PEACH”

✓ located verbatim in the source · title, characters 99–104 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Co-expressed bHLHs enabled peach MYB10s to activate anthocyanin pathway genes in tobacco.

Treatment
bHLHs were co-expressede0
Gene
peach MYB10se0
Outcome
key genes in the anthocyanin pathwaye0
Direction
activatee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“Functions of peach MYB10s were tested in tobacco and shown to activate key genes in the anthocyanin pathway when bHLHs were co-expressed as partners.”

✓ located verbatim in the source · abstract, characters 1491–1640 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

MYB10.1/bHLH3 and MYB10.3/bHLH3 increased anthocyanin production via NtCHS, NtDFR and NtUFGT upregulation.

Treatment
Over-expression of MYB10.1/bHLH3 and MYB10.3/bHLH3e0
Gene
NtCHS, NtDFR and NtUFGTe0
Outcome
anthocyanin productione0
Direction
activatede0
Comparator
other combinationse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“Over-expression of MYB10.1/bHLH3 and MYB10.3/bHLH3 activated anthocyanin production by up-regulating NtCHS, NtDFR and NtUFGT while other combinations were not effective.”

✓ located verbatim in the source · abstract, characters 1641–1810 · show in text ↑
e1

“tobacco transgenic plants”

✓ located verbatim in the source · abstract, characters 1957–1982 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Peach MYB10.1 overexpression caused anthocyanin pigmentation in tobacco reproductive parts through upregulation of biosynthetic genes.

Organ / stage
reproductive partse0
Treatment
over-expressione0
Outcome
anthocyanin pigmentatione0
Direction
inducee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“Its over-expression induce anthocyanin pigmentation in the reproductive parts of transgenic tobacco lines through the up-regulation of transcript levels of many important genes involved in the anthocyanin biosynthetic pathway like phenylalanineammonia-lyase (NtPAL), NtCHS, chalcone isomerase (NtCHI), NtF3H, NtDFR, anthocyanin synthase (NtANS) and NtUFGT.”

✓ located verbatim in the source · abstract, characters 1984–2340 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Pigment accumulation in the tobacco transgenics was limited to reproductive parts.

Organ / stage
reproductive partse0
Outcome
pigment accumulatione0
Qualifier
never present in the vegetative part like stem and leavese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“The pigment accumulation was always limited to reproductive parts and never present in the vegetative part like stem and leaves.”

✓ located verbatim in the source · abstract, characters 2341–2469 · show in text ↑
e1

“tobacco transgenic plants”

✓ located verbatim in the source · abstract, characters 1957–1982 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Type I MYB10.1 tobacco had irregular leaves, reduced height, altered stamens and pistils, missing nectaries and reduced capsules.

Material
type-Ie0
Outcome
irregular leaf shape and size, reduced plant heighte0
Qualifier
reduced capsule developmente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“The strong phenotype, called type-I, is characterized by irregular leaf shape and size, reduced plant height, stamens with reduced filament length and non-dehiscing anthers, reduced pistil length, no nectary gland formation and reduced capsule development but pigmented reproductive parts including androecium, gynoecium and petals.”

✓ located verbatim in the source · abstract, characters 2639–2971 · show in text ↑
e1

“tobacco transgenic plants”

✓ located verbatim in the source · abstract, characters 1957–1982 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Type II MYB10.1 tobacco had regular development and purple seed coats.

Material
type-IIe0
Outcome
regular plant growth and development, but purple seed coatse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“so-called type-II plants, have a mild phenotype with regular plant growth and development, but purple seed coats.”

✓ located verbatim in the source · abstract, characters 2989–3102 · show in text ↑
e1

“tobacco transgenic plants”

✓ located verbatim in the source · abstract, characters 1957–1982 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

MYB10.1 overexpression downregulated NtMYB305 in type I tobacco.

Material
type-Ie0
Treatment
over-expression of peach MYB10.1e0
Gene
NtMYB305e0
Outcome
NtMYB305e0
Direction
down-regulatione0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“In type-I transgenic plants, the over-expression of peach MYB10.1 leads to down-regulation of NtMYB305, a gene similar, but not orthologous, to MYB10.1, which is required for floral development.”

✓ located verbatim in the source · abstract, characters 3208–3402 · show in text ↑
e1

“tobacco transgenic plants”

✓ located verbatim in the source · abstract, characters 1957–1982 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

MYB10.1 upregulated NtAOS, NtJAZd and NtACO in tobacco.

Treatment
MYB10.1e0
Gene
NtAOSe0
Outcome
expressione0
Direction
up-regulatese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“MYB10.1 up-regulates the expression of jasmonic acid (JA) biosynthesis (allene oxide synthase, NtAOS) and signaling (NtJAZd) pathway genes as well as 1-aminocyclopropane-1-carboxylate oxidase (NtACO), a key gene in ethylene synthesis.”

✓ located verbatim in the source · abstract, characters 3413–3647 · show in text ↑
e1

“tobacco transgenic plants”

✓ located verbatim in the source · abstract, characters 1957–1982 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

NECTARIN1 was repressed in MYB10.1 tobacco.

Gene
NECTARIN1 (NtNCE1)e0
Outcome
NECTARIN1 (NtNCE1)e0
Direction
repressede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“Furthermore, NECTARIN1 (NtNCE1) that is known to be involved in nectary gland formation, was repressed since its transcription is regulated by NtMYB305.”

✓ located verbatim in the source · abstract, characters 3648–3800 · show in text ↑
e1

“tobacco transgenic plants”

✓ located verbatim in the source · abstract, characters 1957–1982 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Type II transgenics showed opposite expression results for NtMYB305, NtAOS, NtJAZd and NtNEC1.

Material
type-IIe0
Outcome
opposite results for NtMYB305, NtAOS, NtJAZd and NtNEC1e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“On the contrary, type-II transgenic plants showed opposite results for NtMYB305, NtAOS, NtJAZd and NtNEC1.”

✓ located verbatim in the source · abstract, characters 3801–3907 · show in text ↑
e1

“tobacco transgenic plants”

✓ located verbatim in the source · abstract, characters 1957–1982 · show in text ↑

overexpression · quality: phytochemicals · Nicotiana tabacum (tobacco)Positive and negative results

5 papers: 2 positive, 3 negative or no effect

1 paper in the same direction as this paper · 3 in the opposite direction

  1. negative
  2. negative
  3. negative

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.