Paper · 2001 · Proceedings of the National Academy of Sciences

Sense- and antisense-mediated gene silencing in tobacco is inhibited by the same viral suppressors and is associated with accumulation of small RNAs

Francesco Di Serio; Hanspeter Schöb; Alejandro Iglesias; et al.

7
claims
11
verbatim quotes
62
citations
2
research areas
✓
Open access

Abstract

Antisense-mediated gene silencing (ASGS) and posttranscriptional gene silencing (PTGS) with sense transgenes markedly reduce the steady-state mRNA levels of endogenous genes similar in transcribed sequence. RNase protection assays established that silencing in tobacco plants transformed with plant-defense-related class I sense and antisense chitinase (CHN) transgenes is at the posttranscriptional level. Infection of tobacco plants with cucumber mosaic virus strain FN and a necrotizing strain of potato virus Y, but not with potato virus X, effectively suppressed PTGS and ASGS of both the transgenes and homologous endogenes. This suggests that ASGS and PTGS share components associated with initiation and maintenance of the silent state. Small, ca. 25-nt RNAs (smRNA) of both polarities were associated with PTGS and ASGS in CHN transformants as reported for PTGS in other transgenic plants and for RNA interference in Drosophila. Similar results were obtained with an antisense class I beta-1,3-glucanase transformant showing that viral suppression and smRNAs are a more general feature of ASGS. Several current models hold that diverse signals lead to production of double-stranded RNAs, which are processed to smRNAs that then trigger PTGS. Our results provide direct evidence for mechanistic links between ASGS and PTGS and suggest that ASGS could join a common PTGS pathway at the double-stranded RNA step.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 7

Observationobservedoriginal resultmeasured

Claim · model-written summary

Class I chitinase sense and antisense transgene silencing in tobacco occurs posttranscriptionally.

Gene
chitinase (CHN)e0
Outcome
silencinge0
Qualifier
posttranscriptional levele0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“silencing in tobacco plants transformed with plant-defense-related class I sense and antisense chitinase (CHN) transgenes is at the posttranscriptional level”

✓ located verbatim in the source · abstract, characters 248–405 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Cucumber mosaic virus strain FN infection suppressed PTGS and ASGS of transgenes and homologous endogenes.

Treatment
Infection of tobacco plants with cucumber mosaic virus strain FNe0
Interactor
cucumber mosaic virus strain FNcucumber mosaic cucumoviruse0pathogen
Outcome
PTGS and ASGS of both the transgenes and homologous endogenese0
Direction
suppressede0
Comparator
potato virus Xe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗
cucumber mosaic cucumovirus
cucumber mosaic cucumovirus · InteractorDieterO · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Infection of tobacco plants with cucumber mosaic virus strain FN and a necrotizing strain of potato virus Y, but not with potato virus X, effectively suppressed PTGS and ASGS of both the transgenes and homologous endogenes”

✓ located verbatim in the source · abstract, characters 407–629 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Necrotizing potato virus Y infection suppressed PTGS and ASGS of transgenes and homologous endogenes.

Treatment
a necrotizing strain of potato virus Ye0
Interactor
potato virus YPotato virus Ye0pathogen
Outcome
PTGS and ASGS of both the transgenes and homologous endogenese0
Direction
suppressede0
Comparator
potato virus Xe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗
Potato virus Y
Potato virus Y · InteractorMahmoud Hamdy Abd El-Aziz, Plant Pathology Institute, Agricultural. Research Center, Alexandria, Egyp · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Infection of tobacco plants with cucumber mosaic virus strain FN and a necrotizing strain of potato virus Y, but not with potato virus X, effectively suppressed PTGS and ASGS of both the transgenes and homologous endogenes”

✓ located verbatim in the source · abstract, characters 407–629 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Potato virus X infection did not suppress PTGS or ASGS.

Treatment
potato virus Xe0
Interactor
potato virus XPotato virus Xe0pathogen
Outcome
PTGS and ASGSe0
Direction
note0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“but not with potato virus X, effectively suppressed PTGS and ASGS of both the transgenes and homologous endogenes”

✓ located verbatim in the source · abstract, characters 516–629 · show in text ↑
t0

“in tobacco”

✓ located verbatim in the source · title, characters 45–55 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Small approximately 25-nt RNAs of both polarities were associated with PTGS and ASGS in CHN transformants.

Material
CHN transformantse0
Gene
smRNAe0
Outcome
PTGS and ASGSe0
Value
ca. 25-nte0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“Small, ca. 25-nt RNAs (smRNA) of both polarities were associated with PTGS and ASGS in CHN transformants”

✓ located verbatim in the source · abstract, characters 745–849 · show in text ↑
t0

“in tobacco”

✓ located verbatim in the source · title, characters 45–55 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Antisense class I beta-1,3-glucanase transformants also showed viral suppression and small RNAs.

Material
antisense class I beta-1,3-glucanase transformante0
Outcome
viral suppression and smRNAse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“Similar results were obtained with an antisense class I beta-1,3-glucanase transformant showing that viral suppression and smRNAs are a more general feature of ASGS”

✓ located verbatim in the source · abstract, characters 938–1102 · show in text ↑
t0

“in tobacco”

✓ located verbatim in the source · title, characters 45–55 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors infer a mechanistic link between ASGS and PTGS, possibly converging at the double-stranded RNA step.

Outcome
mechanistic links between ASGS and PTGSe0
Qualifier
double-stranded RNA stepe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“Our results provide direct evidence for mechanistic links between ASGS and PTGS and suggest that ASGS could join a common PTGS pathway at the double-stranded RNA step”

✓ located verbatim in the source · abstract, characters 1251–1417 · show in text ↑
t0

“in tobacco”

✓ located verbatim in the source · title, characters 45–55 · show in text ↑

Solanum tuberosum · Potato virus X · Nicotiana tabacum (tobacco)Positive and negative results

13 papers: 3 positive, 10 negative or no effect

9 papers in the same direction as this paper · 3 in the opposite direction

  1. positive
  2. positive
  3. positive

9 papers more in this group

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.