Paper · 2004 · Plant Cell & Environment

Identification of rice root proteins regulated by gibberellin using proteome analysis

H. KONISHI; H. KITANO; S. KOMATSU

12
claims
23
verbatim quotes
36
citations
3
research areas
✓
Open access

Abstract

ABSTRACT Gibberellin (GA) promoted rice ( Oryza sativa L.) root elongation in a concentration‐dependent manner with roots grown in 0.1 µ m GA 3 being 13.8% longer than controls. On the other hand, the roots of Tan‐ginbozu, a semi‐dwarf cultivar were 69.8% shorter in comparison with Nipponbare, a normal cultivar. Treatments with 10 µ m uniconazole‐P and 10 µ m abscisic acid (ABA) caused decreases in root length in Tan‐ginbozu by 44.6 and 79.2%, respectively. To investigate how GA influences rice root growth, proteome analysis techniques were applied. Extracted proteins were separated by two‐dimensional polyacrylamide gel electrophoresis and analysed using an automated protein sequencer and mass spectrometer. Sixteen proteins show differences in accumulation levels as a result of treatment with GA 3 , uniconazole‐P and ABA treatment and/or the difference between the semi‐dwarf cultivar, Tan‐ginbozu, and normal cultivars. Among these proteins, fructose‐bisphosphate aldolase (EC 4.1.2.13) increased in roots treated with GA 3 , occurred in low levels in Tan‐ginbozu roots, and decreased in roots treated with uniconazole‐P or ABA. Moreover, roots from seedlings grown in 100 µ m glucose were 9.1% longer than controls. These results indicate that increases in fructose‐bisphosphate aldolase activity stimulate the glycolytic pathway and may play an important role in the GA‐induced growth of roots.

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Claims 12

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Gibberellin promoted rice root elongation in a concentration-dependent manner.

Treatment
Gibberellin (GA)e1
Outcome
root elongatione1
Direction
promotede1
Qualifier
in a concentration‐dependent mannere1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e1

“Gibberellin (GA) promoted rice ( Oryza sativa L.) root elongation in a concentration‐dependent manner”

✓ located verbatim in the source · abstract, characters 9–110 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Rice roots grown in 0.1 µm GA3 were 13.8% longer than controls.

Treatment
0.1 µ m GA 3e2
Outcome
rootse2
Direction
longere2
Value
13.8%e2
Comparator
controlse2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e2

“roots grown in 0.1 µ m GA 3 being 13.8% longer than controls”

✓ located verbatim in the source · abstract, characters 116–176 · show in text ↑
e1

“Gibberellin (GA) promoted rice ( Oryza sativa L.) root elongation in a concentration‐dependent manner”

✓ located verbatim in the source · abstract, characters 9–110 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Roots of the semi-dwarf cultivar Tan-ginbozu were 69.8% shorter than those of Nipponbare.

Material
Tan‐ginbozue3
Outcome
rootse3
Direction
shortere3
Value
69.8%e3
Comparator
Nipponbaree3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e3

“the roots of Tan‐ginbozu, a semi‐dwarf cultivar were 69.8% shorter in comparison with Nipponbare, a normal cultivar”

✓ located verbatim in the source · abstract, characters 197–312 · show in text ↑
e1

“Gibberellin (GA) promoted rice ( Oryza sativa L.) root elongation in a concentration‐dependent manner”

✓ located verbatim in the source · abstract, characters 9–110 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Uniconazole-P at 10 µm decreased root length in Tan-ginbozu by 44.6.

Material
Tan‐ginbozue4
Treatment
10 µ m uniconazole‐Pe4
Outcome
root lengthe4
Direction
decreasese4
Value
44.6e4

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e4

“Treatments with 10 µ m uniconazole‐P and 10 µ m abscisic acid (ABA) caused decreases in root length in Tan‐ginbozu by 44.6 and 79.2%, respectively”

✓ located verbatim in the source · abstract, characters 314–460 · show in text ↑
e1

“Gibberellin (GA) promoted rice ( Oryza sativa L.) root elongation in a concentration‐dependent manner”

✓ located verbatim in the source · abstract, characters 9–110 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Abscisic acid at 10 µm decreased root length in Tan-ginbozu by 79.2%.

Material
Tan‐ginbozue4
Treatment
10 µ m abscisic acid (ABA)e4
Outcome
root lengthe4
Direction
decreasese4
Value
79.2%e4

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e4

“Treatments with 10 µ m uniconazole‐P and 10 µ m abscisic acid (ABA) caused decreases in root length in Tan‐ginbozu by 44.6 and 79.2%, respectively”

✓ located verbatim in the source · abstract, characters 314–460 · show in text ↑
e1

“Gibberellin (GA) promoted rice ( Oryza sativa L.) root elongation in a concentration‐dependent manner”

✓ located verbatim in the source · abstract, characters 9–110 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Sixteen rice root proteins differ in accumulation level with GA3, uniconazole-P, ABA or cultivar.

Outcome
accumulation levelse5
Value
Sixteen proteinse5
Qualifier
as a result of treatment with GA 3e5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e5

“Sixteen proteins show differences in accumulation levels as a result of treatment with GA 3 , uniconazole‐P and ABA treatment and/or the difference between the semi‐dwarf cultivar, Tan‐ginbozu, and normal cultivars”

✓ located verbatim in the source · abstract, characters 717–931 · show in text ↑
e1

“Gibberellin (GA) promoted rice ( Oryza sativa L.) root elongation in a concentration‐dependent manner”

✓ located verbatim in the source · abstract, characters 9–110 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Fructose-bisphosphate aldolase increased in rice roots treated with GA3.

Organ / stage
rootse6
Treatment
GA 3e6
Gene
aldolasee6
Outcome
aldolasee6
Direction
increasede6

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e6

“Among these proteins, fructose‐bisphosphate aldolase (EC 4.1.2.13) increased in roots treated with GA 3 , occurred in low levels in Tan‐ginbozu roots, and decreased in roots treated with uniconazole‐P or ABA”

✓ located verbatim in the source · abstract, characters 933–1140 · show in text ↑
e1

“Gibberellin (GA) promoted rice ( Oryza sativa L.) root elongation in a concentration‐dependent manner”

✓ located verbatim in the source · abstract, characters 9–110 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Fructose-bisphosphate aldolase occurred in low levels in Tan-ginbozu roots.

Material
Tan‐ginbozue6
Organ / stage
rootse6
Gene
aldolasee6
Outcome
aldolasee6
Qualifier
occurred in low levelse6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e6

“Among these proteins, fructose‐bisphosphate aldolase (EC 4.1.2.13) increased in roots treated with GA 3 , occurred in low levels in Tan‐ginbozu roots, and decreased in roots treated with uniconazole‐P or ABA”

✓ located verbatim in the source · abstract, characters 933–1140 · show in text ↑
e1

“Gibberellin (GA) promoted rice ( Oryza sativa L.) root elongation in a concentration‐dependent manner”

✓ located verbatim in the source · abstract, characters 9–110 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Fructose-bisphosphate aldolase decreased in rice roots treated with uniconazole-P.

Organ / stage
rootse6
Treatment
uniconazole‐Pe6
Gene
aldolasee6
Outcome
aldolasee6
Direction
decreasede6

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e6

“Among these proteins, fructose‐bisphosphate aldolase (EC 4.1.2.13) increased in roots treated with GA 3 , occurred in low levels in Tan‐ginbozu roots, and decreased in roots treated with uniconazole‐P or ABA”

✓ located verbatim in the source · abstract, characters 933–1140 · show in text ↑
e1

“Gibberellin (GA) promoted rice ( Oryza sativa L.) root elongation in a concentration‐dependent manner”

✓ located verbatim in the source · abstract, characters 9–110 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Fructose-bisphosphate aldolase decreased in rice roots treated with ABA.

Organ / stage
rootse6
Treatment
ABAe6
Gene
aldolasee6
Outcome
aldolasee6
Direction
decreasede6

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e6

“Among these proteins, fructose‐bisphosphate aldolase (EC 4.1.2.13) increased in roots treated with GA 3 , occurred in low levels in Tan‐ginbozu roots, and decreased in roots treated with uniconazole‐P or ABA”

✓ located verbatim in the source · abstract, characters 933–1140 · show in text ↑
e1

“Gibberellin (GA) promoted rice ( Oryza sativa L.) root elongation in a concentration‐dependent manner”

✓ located verbatim in the source · abstract, characters 9–110 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Rice roots from seedlings grown in 100 µm glucose were 9.1% longer than controls.

Treatment
100 µ m glucosee7
Outcome
rootse7
Direction
longere7
Value
9.1%e7
Comparator
controlse7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e7

“roots from seedlings grown in 100 µ m glucose were 9.1% longer than controls”

✓ located verbatim in the source · abstract, characters 1152–1228 · show in text ↑
e1

“Gibberellin (GA) promoted rice ( Oryza sativa L.) root elongation in a concentration‐dependent manner”

✓ located verbatim in the source · abstract, characters 9–110 · show in text ↑
Mechanismhypothesisoriginal resultbasis n/a

Claim · model-written summary

Increased fructose-bisphosphate aldolase activity may stimulate glycolysis and play a role in GA-induced root growth.

Gene
aldolasee0
Outcome
growth of rootse0
Qualifier
stimulate the glycolytic pathwaye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“increases in fructose‐bisphosphate aldolase activity stimulate the glycolytic pathway and may play an important role in the GA‐induced growth of roots”

✓ located verbatim in the source · abstract, characters 1258–1408 · show in text ↑
e1

“Gibberellin (GA) promoted rice ( Oryza sativa L.) root elongation in a concentration‐dependent manner”

✓ located verbatim in the source · abstract, characters 9–110 · show in text ↑

Gibberellic acid · growth · Oryza sativa (rice)Results differ

104 papers: 86 positive, 18 negative or no effect

85 papers in the same direction as this paper · 16 in the opposite direction · 2 reporting no difference from an alternative

  1. negative
  2. no effect
  3. negative

100 papers more in this group

See all 104 papers →

glucose · growth · Oryza sativa (rice)Positive and negative results

9 papers: 8 positive, 1 negative or no effect

7 papers in the same direction as this paper · 1 in the opposite direction

  1. no effect
  2. positive
  3. positive

5 papers more in this group

See all 9 papers →

class · growth · Oryza sativa (rice)Positive and negative results

80 papers: 62 positive, 18 negative or no effect

61 papers in the same direction as this paper · 17 in the opposite direction · 1 reporting no difference from an alternative

  1. no effect
  2. negative
  3. negative

76 papers more in this group

See all 80 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.