Paper · 2003 · Biological and Pharmaceutical Bulletin

Characterization of Proteins Responsive to Gibberellin in the Leaf-Sheath of Rice (Oryza sativa L.) Seedling Using Proteome Analysis.

Shihua Shen; Arun Sharma; Setsuko Komatsu

9
claims
17
verbatim quotes
61
citations
3
research areas
✓
Open access

Abstract

In plants gibberellins (GAs) are responsible for triggering stem or internodal elongation. To comprehend the molecular basis of internodal elongation in rice, a proteomics approach using differentially displayed proteins on two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) was carried out to identify the proteins expressed during the GA controlled leaf-sheath elongation response. Out of 352 protein spots detected on 2-D PAGE, 32 proteins showed modulation in the expression levels in GA3-treated leaf-sheath for 48 h as compared to control. These proteins were analyzed using protein sequencer and/or mass spectrometry in conjunction with the protein database to assign putative identities. The twin protein spots (LS079 and LS083), identified as calreticulin, showed different isoelectric points and expression level in GA3-treated leaf-sheath. The expression level of LS083 (pI 4.0) was down-regulated as compared to the up-regulation of LS079 (pI 4.3). In the presence of GA3 and growth inhibitor, uniconazole and abscisic acid, respectively, no elongation in leaf-sheath occurred and calreticulin did not shift from LS083 to LS079. Over-expression of calreticulin in rice inhibited the callus regeneration and seedling growth. These results suggest that calreticulin is an important component in the GA signaling pathway that regulates rice seedling leaf-sheath elongation.

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Claims 9

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

After 48 h of GA3, 32 of 352 protein spots changed expression relative to control.

Taxon
Rice (Oryza sativa L.)Oryza sativat0
Organ / stage
leaf-sheathe0
Treatment
GA3-treatede0
Outcome
modulation in the expression levelse0
Value
32 proteinse0
Comparator
controle0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Out of 352 protein spots detected on 2-D PAGE, 32 proteins showed modulation in the expression levels in GA3-treated leaf-sheath for 48 h as compared to control.”

✓ located verbatim in the source · abstract, characters 395–556 · show in text ↑
t0

“Rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 77–99 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Calreticulin spots LS079 and LS083 differed in isoelectric point and expression under GA3.

Taxon
Rice (Oryza sativa L.)Oryza sativat0
Organ / stage
leaf-sheathe0
Treatment
GA3-treatede0
Gene
calreticuline0
Outcome
different isoelectric points and expression levele0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The twin protein spots (LS079 and LS083), identified as calreticulin, showed different isoelectric points and expression level in GA3-treated leaf-sheath.”

✓ located verbatim in the source · abstract, characters 707–861 · show in text ↑
t0

“Rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 77–99 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

LS083 expression was down-regulated under GA3.

Taxon
Rice (Oryza sativa L.)Oryza sativat0
Gene
LS083e0
Outcome
expression level of LS083e0
Direction
down-regulatede0
Value
pI 4.0e0

Not reportedTreatmentComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The expression level of LS083 (pI 4.0) was down-regulated”

✓ located verbatim in the source · abstract, characters 862–919 · show in text ↑
t0

“Rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 77–99 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

LS079 expression was up-regulated relative to LS083.

Taxon
Rice (Oryza sativa L.)Oryza sativat0
Gene
LS079e0
Outcome
LS079e0
Direction
up-regulatione0
Value
pI 4.3e0

Not reportedTreatmentComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“the up-regulation of LS079 (pI 4.3)”

✓ located verbatim in the source · abstract, characters 935–970 · show in text ↑
e1

“as compared to the up-regulation of LS079 (pI 4.3)”

✓ located verbatim in the source · abstract, characters 920–970 · show in text ↑
t0

“Rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 77–99 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

With GA3 and growth inhibitors, leaf-sheath elongation did not occur.

Taxon
Rice (Oryza sativa L.)Oryza sativat0
Organ / stage
leaf-sheathe0
Treatment
GA3 and growth inhibitor, uniconazole and abscisic acide0
Outcome
no elongation in leaf-sheathe0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“In the presence of GA3 and growth inhibitor, uniconazole and abscisic acid, respectively, no elongation in leaf-sheath occurred”

✓ located verbatim in the source · abstract, characters 972–1099 · show in text ↑
t0

“Rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 77–99 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

With GA3 and growth inhibitors, calreticulin did not shift from LS083 to LS079.

Taxon
Rice (Oryza sativa L.)Oryza sativat0
Treatment
GA3 and growth inhibitor, uniconazole and abscisic acide1
Gene
calreticuline0
Outcome
calreticulin did not shift from LS083 to LS079e0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“calreticulin did not shift from LS083 to LS079”

✓ located verbatim in the source · abstract, characters 1104–1150 · show in text ↑
e1

“In the presence of GA3 and growth inhibitor, uniconazole and abscisic acid, respectively”

✓ located verbatim in the source · abstract, characters 972–1060 · show in text ↑
t0

“Rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 77–99 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Calreticulin over-expression inhibited rice callus regeneration.

Treatment
Over-expression of calreticuline0
Gene
calreticuline0
Outcome
callus regeneratione0
Direction
inhibitede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Over-expression of calreticulin in rice inhibited the callus regeneration and seedling growth.”

✓ located verbatim in the source · abstract, characters 1152–1246 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Calreticulin over-expression inhibited rice seedling growth.

Treatment
Over-expression of calreticuline0
Gene
calreticuline0
Outcome
seedling growthe0
Direction
inhibitede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Over-expression of calreticulin in rice inhibited the callus regeneration and seedling growth.”

✓ located verbatim in the source · abstract, characters 1152–1246 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors suggest calreticulin participates in GA signaling regulating sheath elongation.

Gene
calreticuline0
Outcome
seedling leaf-sheath elongatione0
Qualifier
GA signaling pathwaye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“calreticulin is an important component in the GA signaling pathway that regulates rice seedling leaf-sheath elongation”

✓ located verbatim in the source · abstract, characters 1274–1392 · show in text ↑

Gibberellic acid · growth · Oryza sativa (rice)Results differ

104 papers: 86 positive, 18 negative or no effect

17 papers in the same direction as this paper · 86 in the opposite direction

  1. positive
  2. positive
  3. positive

100 papers more in this group

See all 104 papers →

uniconazole · growth · Oryza sativa (rice)Positive and negative results

7 papers: 6 positive, 1 negative or no effect

6 in the opposite direction

  1. positive
  2. positive
  3. positive

3 papers more in this group

See all 7 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.