Paper · 2002 · PLANT PHYSIOLOGY

Global Changes in Gene Expression in Response to High Light in Arabidopsis,

Jan Bart Rossel; Iain W. Wilson; Barry J. Pogson

5
claims
10
verbatim quotes
283
citations
2
research areas
✓
Open access

Abstract

A range of environmental conditions can lead to oxidative stress; thus, a prompt and effective response to oxidative stress is crucial for the survival of plants. Microarray and northern-blot analyses were performed toward the identification of the factors and signaling pathways that enable plants to limit oxidative damage caused by exposure to high light (HL). Arabidopsis plants grown under moderate light (100 micromol m(-2) s(-1)) were exposed to HL (1,000 micromol m(-2) s(-1)) for 1 h. The microarray analyses revealed that exposure of Arabidopsis to HL caused an increase in known antioxidant genes, as well as several unknown genes. Some of these unknown genes had homologies to possible regulatory genes and metabolic enzymes. Furthermore, it was found that a range of chaperones were up-regulated in the HL treatment and that this induction was specifically due to the HL stress. The temporal expression under HL and different oxidative stress conditions of a subset of HL-responsive genes was confirmed via northern-blot analysis. Results from the arrays were also compared with publicly available microarray data sets from a range of different stress conditions at the Arabidopsis Functional Genomics Consortium. This cross comparison enabled the identification of genes that may be induced by changes in redox poise. Finally, to determine if the genes that were differentially expressed by HL stress were under similar transcriptional control, we analyzed the promoter sequences for the presence of common motifs.

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Claims 5

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

High light exposure increased expression of known antioxidant genes in Arabidopsis relative to moderate light.

Taxon
ArabidopsisArabidopsise0
Treatment
exposed to HL (1,000 micromol m(-2) s(-1)) for 1 he1
Outcome
known antioxidant genese0
Direction
increasee0
Comparator
moderate light (100 micromol m(-2) s(-1))e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“exposure of Arabidopsis to HL caused an increase in known antioxidant genes”

✓ located verbatim in the source · abstract, characters 532–607 · show in text ↑
e1

“Arabidopsis plants grown under moderate light (100 micromol m(-2) s(-1)) were exposed to HL (1,000 micromol m(-2) s(-1)) for 1 h”

✓ located verbatim in the source · abstract, characters 364–492 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Chaperones were up-regulated under the HL treatment, and this induction was specifically due to HL stress.

Taxon
ArabidopsisArabidopsist0
Treatment
HL treatmente2
Outcome
chaperonese2
Direction
up-regulatede2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Response to High Light in Arabidopsis”

✓ located verbatim in the source · title, characters 37–74 · show in text ↑
e2

“a range of chaperones were up-regulated in the HL treatment and that this induction was specifically due to the HL stress”

✓ located verbatim in the source · abstract, characters 769–890 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Some unknown HL-responsive genes had homologies to possible regulatory genes and metabolic enzymes.

Taxon
ArabidopsisArabidopsist0
Gene
unknown genese3
Outcome
homologies to possible regulatory genes and metabolic enzymese3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Response to High Light in Arabidopsis”

✓ located verbatim in the source · title, characters 37–74 · show in text ↑
e3

“Some of these unknown genes had homologies to possible regulatory genes and metabolic enzymes”

✓ located verbatim in the source · abstract, characters 643–736 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Temporal expression of a subset of HL-responsive genes under HL and different oxidative stress conditions was confirmed by northern blot.

Taxon
ArabidopsisArabidopsist0
Gene
HL-responsive genese4
Outcome
temporal expressione4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Response to High Light in Arabidopsis”

✓ located verbatim in the source · title, characters 37–74 · show in text ↑
e4

“The temporal expression under HL and different oxidative stress conditions of a subset of HL-responsive genes was confirmed via northern-blot analysis”

✓ located verbatim in the source · abstract, characters 892–1042 · show in text ↑
Observationhypothesisoriginal resultmeasured

Claim · model-written summary

Cross comparison with public microarray data identified genes that may be induced by changes in redox poise.

Taxon
ArabidopsisArabidopsist0
Outcome
genes that may be induced by changes in redox poisee5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Response to High Light in Arabidopsis”

✓ located verbatim in the source · title, characters 37–74 · show in text ↑
e5

“This cross comparison enabled the identification of genes that may be induced by changes in redox poise”

✓ located verbatim in the source · abstract, characters 1227–1330 · show in text ↑

light · molecular: expression · ArabidopsisPositive and negative results

80 papers: 55 positive, 25 negative or no effect

54 papers in the same direction as this paper · 21 in the opposite direction · 4 reporting no difference from an alternative

  1. negative
  2. negative
  3. positive

76 papers more in this group

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.