Paper · 2011 · The Plant Journal

Epoxycarotenoid cleavage by NCED5 fine‐tunes ABA accumulation and affects seed dormancy and drought tolerance with other NCED family members

Anne Frey; Delphine Effroy; Valérie Lefebvre; et al.

9
claims
18
verbatim quotes
366
citations
3
research areas
✓
Open access

Abstract

Carotenoid cleavage, catalyzed by the 9-cis-epoxycarotenoid dioxygenase (NCED) constitutes a key step in the regulation of ABA biosynthesis. In Arabidopsis, this enzyme is encoded by five genes. NCED3 has been shown to play a major role in the regulation of ABA synthesis in response to water deficit, whereas NCED6 and NCED9 have been shown to be essential for the ABA production in the embryo and endosperm that imposes dormancy. Reporter gene analysis was carried out to determine the spatiotemporal pattern of NCED5 and NCED9 gene expression. GUS activity from the NCED5 promoter was detected in both the embryo and endosperm of developing seeds with maximal staining after mid-development. NCED9 expression was found at early stages in the testa outer integument layer 1, and after mid-development in epidermal cells of the embryo, but not in the endosperm. In accordance with its temporal- and tissue-specific expression, the phenotypic analysis of nced5 nced6 nced9 triple mutant showed the involvement of the NCED5 gene, together with NCED6 and NCED9, in the induction of seed dormancy. In contrast to nced6 and nced9, however, nced5 mutation did not affect the gibberellin required for germination. In vegetative tissues, combining nced5 and nced3 mutations reduced vegetative growth, increased water loss upon dehydration, and decreased ABA levels under both normal and stressed conditions, as compared with nced3. NCED5 thus contributes, together with NCED3, to ABA production affecting plant growth and water stress tolerance.

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Claims 9

Observationobservedoriginal resultmeasured

Claim · model-written summary

NCED5 promoter activity is detected in the embryo and endosperm of developing seeds, with maximal staining after mid-development.

Taxon
ArabidopsisArabidopsise0
Organ / stage
embryo and endosperm of developing seedse1
Gene
NCED5e1
Outcome
GUS activitye1
Qualifier
maximal staining after mid-developmente1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“In Arabidopsis, this enzyme is encoded by five genes”

✓ located verbatim in the source · abstract, characters 141–193 · show in text ↑
e1

“GUS activity from the NCED5 promoter was detected in both the embryo and endosperm of developing seeds with maximal staining after mid-development”

✓ located verbatim in the source · abstract, characters 547–693 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

NCED9 expression is found at early stages in the testa outer integument layer 1 of Arabidopsis seeds.

Taxon
ArabidopsisArabidopsise0
Organ / stage
testa outer integument layer 1e2
Gene
NCED9e2
Outcome
NCED9 expressione2
Qualifier
at early stagese2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“In Arabidopsis, this enzyme is encoded by five genes”

✓ located verbatim in the source · abstract, characters 141–193 · show in text ↑
e2

“NCED9 expression was found at early stages in the testa outer integument layer 1, and after mid-development in epidermal cells of the embryo, but not in the endosperm”

✓ located verbatim in the source · abstract, characters 695–861 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

NCED9 expression is found in epidermal cells of the embryo after mid-development but not in the endosperm.

Taxon
ArabidopsisArabidopsise0
Organ / stage
epidermal cells of the embryoe2
Gene
NCED9e2
Outcome
NCED9 expressione2
Qualifier
but not in the endosperme2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“In Arabidopsis, this enzyme is encoded by five genes”

✓ located verbatim in the source · abstract, characters 141–193 · show in text ↑
e2

“NCED9 expression was found at early stages in the testa outer integument layer 1, and after mid-development in epidermal cells of the embryo, but not in the endosperm”

✓ located verbatim in the source · abstract, characters 695–861 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

NCED5 is involved, together with NCED6 and NCED9, in the induction of seed dormancy in Arabidopsis.

Taxon
ArabidopsisArabidopsise0
Material
nced5 nced6 nced9 triple mutante3
Gene
NCED5e3
Outcome
induction of seed dormancye3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“In Arabidopsis, this enzyme is encoded by five genes”

✓ located verbatim in the source · abstract, characters 141–193 · show in text ↑
e3

“the phenotypic analysis of nced5 nced6 nced9 triple mutant showed the involvement of the NCED5 gene, together with NCED6 and NCED9, in the induction of seed dormancy”

✓ located verbatim in the source · abstract, characters 928–1093 · show in text ↑
Associationobservedoriginal resultno effectmeasured

Claim · model-written summary

The nced5 mutation did not affect the gibberellin required for germination in Arabidopsis.

Taxon
ArabidopsisArabidopsise0
Treatment
nced5 mutatione4
Gene
nced5e4
Outcome
gibberellin required for germinatione4
Direction
did not affecte4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“In Arabidopsis, this enzyme is encoded by five genes”

✓ located verbatim in the source · abstract, characters 141–193 · show in text ↑
e4

“nced5 mutation did not affect the gibberellin required for germination”

✓ located verbatim in the source · abstract, characters 1136–1206 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Combined nced5 and nced3 mutations reduced vegetative growth in Arabidopsis compared with nced3.

Taxon
ArabidopsisArabidopsise0
Treatment
combining nced5 and nced3 mutationse5
Outcome
vegetative growthe5
Direction
reducede5
Comparator
nced3e5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“In Arabidopsis, this enzyme is encoded by five genes”

✓ located verbatim in the source · abstract, characters 141–193 · show in text ↑
e5

“combining nced5 and nced3 mutations reduced vegetative growth, increased water loss upon dehydration, and decreased ABA levels under both normal and stressed conditions, as compared with nced3”

✓ located verbatim in the source · abstract, characters 1231–1423 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Combined nced5 and nced3 mutations increased water loss upon dehydration compared with nced3.

Taxon
ArabidopsisArabidopsise0
Treatment
combining nced5 and nced3 mutationse5
Outcome
water loss upon dehydratione5
Direction
increasede5
Comparator
nced3e5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“In Arabidopsis, this enzyme is encoded by five genes”

✓ located verbatim in the source · abstract, characters 141–193 · show in text ↑
e5

“combining nced5 and nced3 mutations reduced vegetative growth, increased water loss upon dehydration, and decreased ABA levels under both normal and stressed conditions, as compared with nced3”

✓ located verbatim in the source · abstract, characters 1231–1423 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Combined nced5 and nced3 mutations decreased ABA levels under normal and stressed conditions compared with nced3.

Taxon
ArabidopsisArabidopsise0
Treatment
combining nced5 and nced3 mutationse5
Compound
ABAe5
Outcome
ABA levelse5
Direction
decreasede5
Qualifier
under both normal and stressed conditionse5
Comparator
nced3e5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“In Arabidopsis, this enzyme is encoded by five genes”

✓ located verbatim in the source · abstract, characters 141–193 · show in text ↑
e5

“combining nced5 and nced3 mutations reduced vegetative growth, increased water loss upon dehydration, and decreased ABA levels under both normal and stressed conditions, as compared with nced3”

✓ located verbatim in the source · abstract, characters 1231–1423 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

NCED5 contributes together with NCED3 to ABA production that affects plant growth and water stress tolerance.

Taxon
ArabidopsisArabidopsise0
Gene
NCED5e6
Compound
ABAe6
Outcome
ABA productione6
Qualifier
affecting plant growth and water stress tolerancee6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“In Arabidopsis, this enzyme is encoded by five genes”

✓ located verbatim in the source · abstract, characters 141–193 · show in text ↑
e6

“NCED5 thus contributes, together with NCED3, to ABA production affecting plant growth and water stress tolerance”

✓ located verbatim in the source · abstract, characters 1425–1537 · show in text ↑

loss of function · physiology: water · ArabidopsisPositive and negative results

6 papers: 2 positive, 4 negative or no effect

3 papers in the same direction as this paper · 2 in the opposite direction

  1. positive
  2. positive
  3. negative

2 papers more in this group

See all 6 papers →

loss of function · growth · ArabidopsisPositive and negative results

234 papers: 51 positive, 183 negative or no effect

182 papers in the same direction as this paper · 51 in the opposite direction

  1. negative
  2. positive
  3. positive

230 papers more in this group

See all 234 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.