Paper · 2026 · Agriculture

The FPF Gene Family in Tomato: Genome-Wide Identification and the Role of SlFPF1 in Gibberellin-Dependent Growth

Yali Zhu; Yuanyuan Kong; Xingping Liu; et al.

14
claims
28
verbatim quotes
0
citations
2
research areas
✓
Open access · cc-by

Abstract

Flowering promoting factor 1 (FPF1) is a key regulator of plant flowering time. While the functions of the FPF family have been characterized in species such as Arabidopsis and rice, systematic studies on the tomato FPF family remain limited. In this study, we comprehensively analyzed the FPF family in tomato (Solanum lycopersicum L.), identifying five SlFPF members in the tomato genome. Phylogenetic analysis classified these genes into five distinct subgroups, and chromosome mapping revealed their distribution across three chromosomes, with the highest density on chromosome 1. Promoter analysis identified a range of putative cis-acting elements related to abiotic stress and hormonal responses. Differential expression analysis of various tissues showed that the five SlFPF genes exhibit varying expression levels, where SlFPF1 had a significantly higher expression compared to the others. Following treatments with abiotic stresses (NaCl, PEG, dark, and low light) and phytohormones (GA, MeJA, ABA, and SA), SlFPF1 expression is notably higher under GA treatment than under other conditions. Based on these findings, SlFPF1 and GA treatments were selected for further functional analysis. The results show that GA treatment significantly promotes multiple morphological traits, including root length, stem diameter, leaf area, plant height, dry weight, and fresh weight. However, silencing SlFPF1 expression led to a reduction in all these traits. Moreover, in SlFPF1-silenced plants, GA treatment failed to enhance root length, leaf area, fresh weight, and dry weight, indicating that GA-dependent growth promotion in tomato plants relies on SlFPF1. This study provides a theoretical foundation for understanding the SlFPF gene family and its role in plant growth and stress responses.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 14

Observationobservedoriginal resultmeasured

Claim · model-written summary

Five SlFPF genes were identified in the tomato genome.

Gene
SlFPFe0
Outcome
five SlFPF memberse0
Value
fivee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“identifying five SlFPF members in the tomato genome”

✓ located verbatim in the source · abstract, characters 338–389 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The tomato SlFPF genes fell into five phylogenetic subgroups.

Gene
FPFe1
Outcome
five distinct subgroupse0
Value
fivee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Phylogenetic analysis classified these genes into five distinct subgroups”

✓ located verbatim in the source · abstract, characters 391–464 · show in text ↑
e1

“FPF family in tomato”

✓ located verbatim in the source · abstract, characters 290–310 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

SlFPF genes mapped to three chromosomes, densest on chromosome 1.

Gene
SlFPFe1
Outcome
distribution across three chromosomese0
Value
three chromosomese0
Qualifier
highest density on chromosome 1e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“chromosome mapping revealed their distribution across three chromosomes, with the highest density on chromosome 1”

✓ located verbatim in the source · abstract, characters 470–583 · show in text ↑
e1

“five SlFPF members in the tomato genome”

✓ located verbatim in the source · abstract, characters 350–389 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Promoters contained putative abiotic-stress and hormone response elements.

Gene
FPFe1
Outcome
putative cis-acting elements related to abiotic stress and hormonal responsese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Promoter analysis identified a range of putative cis-acting elements related to abiotic stress and hormonal responses”

✓ located verbatim in the source · abstract, characters 585–702 · show in text ↑
e1

“FPF family in tomato”

✓ located verbatim in the source · abstract, characters 290–310 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The five SlFPF genes varied in tissue expression.

Gene
SlFPFe0
Outcome
varying expression levelse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the five SlFPF genes exhibit varying expression levels”

✓ located verbatim in the source · abstract, characters 768–822 · show in text ↑
e1

“FPF family in tomato”

✓ located verbatim in the source · abstract, characters 290–310 · show in text ↑
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

SlFPF1 expression was significantly higher than other SlFPF genes.

Gene
SlFPF1e0
Outcome
expressione0
Direction
highere0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“SlFPF1 had a significantly higher expression compared to the others”

✓ located verbatim in the source · abstract, characters 830–897 · show in text ↑
e1

“FPF family in tomato”

✓ located verbatim in the source · abstract, characters 290–310 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

GA treatment induced higher SlFPF1 expression than other conditions.

Treatment
GA treatmente0
Gene
SlFPF1e0
Outcome
SlFPF1 expressione0
Direction
highere0
Comparator
other conditionse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“SlFPF1 expression is notably higher under GA treatment than under other conditions”

✓ located verbatim in the source · abstract, characters 1018–1100 · show in text ↑
e1

“FPF family in tomato”

✓ located verbatim in the source · abstract, characters 290–310 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

GA significantly increased tomato root length, stem diameter, and leaf area.

Treatment
GA treatmente0
Outcome
root length, stem diameter, leaf areae0
Direction
promotese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“GA treatment significantly promotes multiple morphological traits, including root length, stem diameter, leaf area, plant height, dry weight, and fresh weight”

✓ located verbatim in the source · abstract, characters 1221–1379 · show in text ↑
e1

“FPF family in tomato”

✓ located verbatim in the source · abstract, characters 290–310 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

GA significantly increased tomato height and dry and fresh weight.

Treatment
GA treatmente0
Outcome
plant height, dry weight, and fresh weighte0
Direction
promotese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“GA treatment significantly promotes multiple morphological traits, including root length, stem diameter, leaf area, plant height, dry weight, and fresh weight”

✓ located verbatim in the source · abstract, characters 1221–1379 · show in text ↑
e1

“FPF family in tomato”

✓ located verbatim in the source · abstract, characters 290–310 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

SlFPF1 silencing reduced tomato root length, stem diameter, and leaf area.

Treatment
silencing SlFPF1 expressione0
Gene
SlFPF1e0
Outcome
root length, stem diameter, leaf areae1
Direction
reductione0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“silencing SlFPF1 expression led to a reduction in all these traits”

✓ located verbatim in the source · abstract, characters 1390–1456 · show in text ↑
e1

“root length, stem diameter, leaf area, plant height, dry weight, and fresh weight”

✓ located verbatim in the source · abstract, characters 1298–1379 · show in text ↑
e2

“FPF family in tomato”

✓ located verbatim in the source · abstract, characters 290–310 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

SlFPF1 silencing reduced tomato height and dry and fresh weight.

Treatment
silencing SlFPF1 expressione0
Outcome
plant height, dry weight, and fresh weighte1
Direction
reductione0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“silencing SlFPF1 expression led to a reduction in all these traits”

✓ located verbatim in the source · abstract, characters 1390–1456 · show in text ↑
e1

“plant height, dry weight, and fresh weight”

✓ located verbatim in the source · abstract, characters 1337–1379 · show in text ↑
e2

“FPF family in tomato”

✓ located verbatim in the source · abstract, characters 290–310 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

GA did not enhance root length or leaf area in SlFPF1-silenced plants.

Material
SlFPF1-silenced plantse0
Treatment
GA treatmente0
Outcome
root length, leaf areae0
Direction
failed to enhancee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“in SlFPF1-silenced plants, GA treatment failed to enhance root length, leaf area, fresh weight, and dry weight”

✓ located verbatim in the source · abstract, characters 1468–1578 · show in text ↑
e1

“FPF family in tomato”

✓ located verbatim in the source · abstract, characters 290–310 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

GA did not enhance fresh or dry weight in SlFPF1-silenced plants.

Material
SlFPF1-silenced plantse0
Treatment
GA treatmente0
Outcome
fresh weight, and dry weighte0
Direction
failed to enhancee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“in SlFPF1-silenced plants, GA treatment failed to enhance root length, leaf area, fresh weight, and dry weight”

✓ located verbatim in the source · abstract, characters 1468–1578 · show in text ↑
e1

“FPF family in tomato”

✓ located verbatim in the source · abstract, characters 290–310 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors infer that GA-dependent tomato growth promotion relies on SlFPF1.

Gene
SlFPF1e0
Outcome
GA-dependent growth promotione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“GA-dependent growth promotion in tomato plants relies on SlFPF1”

✓ located verbatim in the source · abstract, characters 1596–1659 · show in text ↑

Gibberellic acid · growth · Solanum lycopersicum (tomato)Results differ

87 papers: 80 positive, 7 negative or no effect

79 papers in the same direction as this paper · 7 in the opposite direction

  1. positive
  2. positive
  3. positive

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loss of function · growth · Solanum lycopersicum (tomato)Positive and negative results

60 papers: 16 positive, 44 negative or no effect

43 papers in the same direction as this paper · 16 in the opposite direction

  1. negative
  2. positive
  3. positive

56 papers more in this group

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.