Paper · 2025 · eLife

Natural variation in salt-induced changes in root:shoot ratio reveals SR3G as a negative regulator of root suberization and salt resilience in Arabidopsis

Maryam Rahmati Ishka; Hayley Sussman; Yunfei Hu; et al.

7
claims
15
verbatim quotes
5
citations
3
research areas
✓
Open access · cc-by

Abstract

Soil salinity is one of the major threats to agricultural productivity worldwide. Salt stress exposure alters root and shoots growth rates, thereby affecting overall plant performance. While past studies have extensively documented the effect of salt stress on root elongation and shoot development separately, here we take an innovative approach by examining the coordination of root and shoot growth under salt stress conditions. Utilizing a newly developed tool for quantifying the root:shoot ratio in agar-grown Arabidopsis seedlings, we found that salt stress results in a loss of coordination between root and shoot growth rates. We identify a specific gene cluster encoding domain-of-unknown-function 247 (DUF247), and characterize one of these genes as S alt R oot:shoot R atio R egulator G ene (SR3G). Further analysis elucidates the role of SR3G as a negative regulator of salt stress tolerance, revealing its function in regulating shoot growth, root suberization, and sodium accumulation. We further characterize that SR3G expression is modulated by WRKY75 transcription factor, known as a positive regulator of salt stress tolerance. Finally, we show that the salt stress sensitivity of wrky75 mutant is completely diminished when it is combined with sr3g mutation. Together, our results demonstrate that utilizing root:shoot ratio as an architectural feature leads to the discovery of a new stress resilience gene. The study’s innovative approach and findings not only contribute to our understanding of plant stress tolerance mechanisms but also open new avenues for genetic and agronomic strategies to enhance crop environmental resilience.

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Claims 7

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Salt stress disrupted coordination of root and shoot growth rates.

Taxon
ArabidopsisArabidopsist0
Treatment
salt stresse0
Outcome
coordination between root and shoot growth ratese0
Direction
losse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“salt stress results in a loss of coordination between root and shoot growth rates”

✓ located verbatim in the source · abstract, characters 553–634 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 143–154 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

A DUF247 gene cluster was identified.

Taxon
ArabidopsisArabidopsist0
Outcome
specific gene cluster encoding domain-of-unknown-function 247 (DUF247)e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“We identify a specific gene cluster encoding domain-of-unknown-function 247 (DUF247)”

✓ located verbatim in the source · abstract, characters 636–720 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 143–154 · show in text ↑
Mechanismobservedoriginal resultnegativemeasured

Claim · model-written summary

SR3G negatively regulates salt stress tolerance.

Taxon
ArabidopsisArabidopsist0
Gene
SR3Ge0
Outcome
salt stress tolerancee0
Direction
negative regulatore0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“SR3G as a negative regulator of salt stress tolerance”

✓ located verbatim in the source · abstract, characters 851–904 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 143–154 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

SR3G regulates shoot growth, root suberization and sodium accumulation.

Taxon
ArabidopsisArabidopsist0
Gene
SR3Ge1
Outcome
shoot growth, root suberization, and sodium accumulatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“its function in regulating shoot growth, root suberization, and sodium accumulation”

✓ located verbatim in the source · abstract, characters 916–999 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 143–154 · show in text ↑
e1

“SR3G as a negative regulator of salt stress tolerance”

✓ located verbatim in the source · abstract, characters 851–904 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

WRKY75 modulates SR3G expression.

Taxon
ArabidopsisArabidopsist0
Gene
WRKY75 transcription factore0
Outcome
SR3G expressione0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“SR3G expression is modulated by WRKY75 transcription factor”

✓ located verbatim in the source · abstract, characters 1030–1089 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 143–154 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Combining wrky75 with sr3g eliminated the salt sensitive phenotype.

Taxon
ArabidopsisArabidopsist0
Treatment
combined with sr3g mutatione0
Outcome
salt stress sensitivitye0
Direction
completely diminishede0
Comparator
wrky75 mutante0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the salt stress sensitivity of wrky75 mutant is completely diminished when it is combined with sr3g mutation”

✓ located verbatim in the source · abstract, characters 1169–1277 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 143–154 · show in text ↑
Method / resourceauthor interpretationoriginal resultmeasured

Claim · model-written summary

Root to shoot ratio enabled discovery of a stress resilience gene.

Taxon
ArabidopsisArabidopsist0
Outcome
discovery of a new stress resilience genee0
Value
a new stress resilience genee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“utilizing root:shoot ratio as an architectural feature leads to the discovery of a new stress resilience gene”

✓ located verbatim in the source · abstract, characters 1318–1427 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 143–154 · show in text ↑

salinity · growth · ArabidopsisResults differ

25 papers: 3 positive, 22 negative or no effect

21 papers in the same direction as this paper · 3 in the opposite direction

  1. negative
  2. negative
  3. positive

21 papers more in this group

See all 25 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.