Paper · 2024 · Journal of Citrus Pathology

Two distinct viral suppressors of RNA silencing encoded by citrus tatter leaf virus

Shih-hua Tan; Sohrab Bodaghi; Arunabha Mitra; et al.

9
claims
14
verbatim quotes
0
citations
2
research areas
✓
Open access · cc-by

Abstract

Two proteins of the citrus tatter leaf virus (CTLV), a strain of the apple stem grooving virus (ASGV), capable of inducing citrus bud union disorders on commercially important trifoliate and citrange rootstocks, were identified as viral suppressors of RNA silencing (VSR). Both the coat protein (CP) and the movement protein (MP) suppressed RNA silencing in GFP-transgenic Nicotiana benthamiana 16c plants in agrobacterium-mediated co-infiltration assays; the MP acted as a local VSR, while the CP acted as a systemic VSR. When the potato virus X (PVX) infectious vector harbored either the CTLV CP or MP gene, viral infection and symptom development were promoted in N. benthamiana . Deletions of amino acids in the CP sequence or the MP sequence resulted in failure to promote PVX infections as well as suppression of silencing in agrobacterium-mediated co-infiltration assays. Mass spectrometry-based immunoprecipitation proteomics showed that neither the CTLV CP nor the MP interacts with cellular components directly involved in host antiviral RNA silencing pathways. RNA immunoprecipitation (RIP) and RNA-protein pull-down assays indicated that the CTLV MP interacts with double-stranded RNA (dsRNA) presumably through a protein complex or proteins containing RNA binding domains. It is possible that the MP prevents dsRNA cleavage through this mechanism, leading to suppression of host antiviral RNA silencing. These findings confirmed that CTLV uses VSRs as part of its overall strategy to overcome host antiviral defenses and are indicative of the ability of ASGV and CTLV to infect a wide range of hosts including different species of woody and herbaceous plants.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 9

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

CTLV coat protein suppressed RNA silencing systemically in Nicotiana benthamiana.

Taxon
Nicotiana benthamianaNicotiana benthamianae0
Treatment
coat protein (CP)e0
Gene
coat protein (CP)e0
Outcome
RNA silencinge0
Direction
suppressede0
Qualifier
systemic VSRe0

Not reportedInteractorComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Both the coat protein (CP) and the movement protein (MP) suppressed RNA silencing in GFP-transgenic Nicotiana benthamiana 16c plants in agrobacterium-mediated co-infiltration assays; the MP acted as a local VSR, while the CP acted as a systemic VSR.”

✓ located verbatim in the source · abstract, characters 273–522 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

CTLV movement protein suppressed RNA silencing locally in Nicotiana benthamiana.

Taxon
Nicotiana benthamianaNicotiana benthamianae0
Treatment
movement protein (MP)e0
Gene
movement protein (MP)e0
Outcome
RNA silencinge0
Direction
suppressede0
Qualifier
local VSRe0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Both the coat protein (CP) and the movement protein (MP) suppressed RNA silencing in GFP-transgenic Nicotiana benthamiana 16c plants in agrobacterium-mediated co-infiltration assays; the MP acted as a local VSR, while the CP acted as a systemic VSR.”

✓ located verbatim in the source · abstract, characters 273–522 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

PVX carrying CTLV CP promoted viral infection and symptoms in Nicotiana benthamiana.

Taxon
N. benthamianaNicotiana benthamianae0
Treatment
potato virus X (PVX) infectious vectore0
Interactor
potato virus X (PVX)Potato virus Xe0pathogen
Gene
CTLV CPe0
Outcome
viral infection and symptom developmente0
Direction
promotede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“When the potato virus X (PVX) infectious vector harbored either the CTLV CP or MP gene, viral infection and symptom development were promoted in N. benthamiana .”

✓ located verbatim in the source · abstract, characters 523–684 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

PVX carrying CTLV MP promoted viral infection and symptoms in Nicotiana benthamiana.

Taxon
N. benthamianaNicotiana benthamianae0
Treatment
potato virus X (PVX) infectious vectore0
Interactor
potato virus X (PVX)Potato virus Xe0pathogen
Gene
MP genee0
Outcome
viral infection and symptom developmente0
Direction
promotede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“When the potato virus X (PVX) infectious vector harbored either the CTLV CP or MP gene, viral infection and symptom development were promoted in N. benthamiana .”

✓ located verbatim in the source · abstract, characters 523–684 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Deleting amino acids from CP prevented promotion of PVX infection and silencing suppression.

Taxon
Nicotiana benthamianaNicotiana benthamianae1
Treatment
Deletions of amino acids in the CP sequencee0
Interactor
PVXPotato virus Xe0pathogen
Gene
CP sequencee0
Outcome
PVX infections as well as suppression of silencinge0
Direction
failure to promotee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Deletions of amino acids in the CP sequence or the MP sequence resulted in failure to promote PVX infections as well as suppression of silencing in agrobacterium-mediated co-infiltration assays.”

✓ located verbatim in the source · abstract, characters 685–879 · show in text ↑
e1

“Nicotiana benthamiana 16c plants”

✓ located verbatim in the source · abstract, characters 373–405 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Deleting amino acids from MP prevented promotion of PVX infection and silencing suppression.

Taxon
Nicotiana benthamianaNicotiana benthamianae1
Treatment
Deletions of amino acids in the CP sequence or the MP sequencee0
Interactor
PVXPotato virus Xe0pathogen
Gene
MP sequencee0
Outcome
PVX infections as well as suppression of silencinge0
Direction
failure to promotee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Deletions of amino acids in the CP sequence or the MP sequence resulted in failure to promote PVX infections as well as suppression of silencing in agrobacterium-mediated co-infiltration assays.”

✓ located verbatim in the source · abstract, characters 685–879 · show in text ↑
e1

“Nicotiana benthamiana 16c plants”

✓ located verbatim in the source · abstract, characters 373–405 · show in text ↑
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

Neither CTLV CP nor MP interacted directly with host antiviral silencing components.

Taxon
Nicotiana benthamianaNicotiana benthamianae1
Gene
CTLV CP nor the MPe0
Outcome
interacts with cellular components directly involved in host antiviral RNA silencing pathwayse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“neither the CTLV CP nor the MP interacts with cellular components directly involved in host antiviral RNA silencing pathways.”

✓ located verbatim in the source · abstract, characters 947–1072 · show in text ↑
e1

“Nicotiana benthamiana 16c plants”

✓ located verbatim in the source · abstract, characters 373–405 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

CTLV MP interacted with dsRNA, possibly through an RNA-binding protein complex.

Taxon
Nicotiana benthamianaNicotiana benthamianae1
Gene
CTLV MPe0
Outcome
interacts with double-stranded RNA (dsRNA)e0
Qualifier
presumably through a protein complex or proteins containing RNA binding domainse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the CTLV MP interacts with double-stranded RNA (dsRNA) presumably through a protein complex or proteins containing RNA binding domains.”

✓ located verbatim in the source · abstract, characters 1151–1286 · show in text ↑
e1

“Nicotiana benthamiana 16c plants”

✓ located verbatim in the source · abstract, characters 373–405 · show in text ↑
Mechanismhypothesisoriginal resultnegativebasis n/a

Claim · model-written summary

The authors propose MP may prevent dsRNA cleavage, suppressing host antiviral RNA silencing.

Taxon
Nicotiana benthamianaNicotiana benthamianae1
Gene
MPe0
Outcome
suppression of host antiviral RNA silencinge0
Qualifier
prevents dsRNA cleavagee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“It is possible that the MP prevents dsRNA cleavage through this mechanism, leading to suppression of host antiviral RNA silencing.”

✓ located verbatim in the source · abstract, characters 1287–1417 · show in text ↑
e1

“Nicotiana benthamiana 16c plants”

✓ located verbatim in the source · abstract, characters 373–405 · show in text ↑

Solanum tuberosum · Potato virus X · Nicotiana benthamianaPositive and negative results

25 papers: 2 positive, 23 negative or no effect

22 papers in the same direction as this paper · 2 in the opposite direction

  1. positive
  2. positive
  3. negative

21 papers more in this group

See all 25 papers →

loss of function · Potato virus X · Nicotiana benthamianaPositive and negative results

15 papers: 8 positive, 7 negative or no effect

7 papers in the same direction as this paper · 7 in the opposite direction

  1. negative
  2. negative
  3. negative

11 papers more in this group

See all 15 papers →

infection · Potato virus X · Nicotiana benthamianaResults agree

6 papers: 0 positive, 6 negative or no effect

5 papers in the same direction as this paper

  1. negative
  2. negative
  3. negative

2 papers more in this group

See all 6 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.