Paper · 2024 · Journal of Experimental Botany

Local signal from Trichoderma afroharzianum T22 induces host transcriptome and endophytic microbiome leading to growth promotion in sorghum

Ahmad H Kabir; Asha Thapa; Md Rokibul Hasan; et al.

12
claims
19
verbatim quotes
13
citations
4
research areas
✓
Open access

Abstract

Trichoderma, a highly abundant soil fungus, may benefit plants, yet it remains understudied in sorghum (Sorghum bicolor). In this study, sorghum plants were grown for 5 weeks in pots of soil with or without inoculation of T. afroharzianum T22. Inoculation with T. afroharzianum T22 significantly increased growth parameters and nutrient levels, demonstrating its beneficial role in sorghum. A split-root assay demonstrated that T. afroharzianum T22 is essential in both compartments of the pot for promoting plant growth, suggesting that local signals from this fungus drive symbiotic benefits in sorghum. RNA-seq analysis revealed that inoculation with T. afroharzianum T22 induced genes responsible for mineral transport (such as nitrate and aquaporin transporters), auxin response, sugar assimilation (hexokinase), and disease resistance (thaumatin) in sorghum roots. Microbial community analysis further unveiled the positive role of T. afroharzianum T22 in enriching Penicillium and Streptomyces while reducing disease-causing Fusarium in the roots. The microbial consortium, consisting of enriched microbiomes from bacterial and fungal communities, showed disrupted morphological features in plants inoculated with T. afroharzianum T22 in the absence of Streptomyces griseus. However, this disruption was not observed in the absence of Penicillium chrysogenum. These results indicate that S. griseus acts as a helper microbe in close association with T. afroharzianum T22 in the sorghum endosphere. This study provides the first comprehensive explanation of how T. afroharzianum T22 modulates host molecular determinants and endophytic helper microbes, thereby collectively promoting sorghum growth. These findings may facilitate the formulation of synthetic microbial inoculants dominated by T. afroharzianum T22 to enhance growth and stress resilience in sorghum and similar crops.

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Claims 12

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Inoculation with T. afroharzianum T22 significantly increased sorghum growth parameters and nutrient levels compared with uninoculated soil.

Taxon
sorghumSorghume0
Treatment
Inoculation with T. afroharzianum T22e1
Interactor
T. afroharzianum T22Trichoderma afroharzianume1symbiont
Outcome
growth parameters and nutrient levelse1
Direction
increasede1
Comparator
without inoculatione0
Setting
pots of soile0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e0

“sorghum plants were grown for 5 weeks in pots of soil with or without inoculation of T. afroharzianum T22”

✓ located verbatim in the source · abstract, characters 137–242 · show in text ↑
e1

“Inoculation with T. afroharzianum T22 significantly increased growth parameters and nutrient levels”

✓ located verbatim in the source · abstract, characters 244–343 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

Split-root assay showed that T. afroharzianum T22 must be present in both compartments of the pot to promote sorghum growth.

Taxon
sorghumSorghume0
Interactor
T. afroharzianum T22Trichoderma afroharzianume2symbiont
Outcome
plant growthe2
Qualifier
both compartments of the pote2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e0

“sorghum plants were grown for 5 weeks in pots of soil with or without inoculation of T. afroharzianum T22”

✓ located verbatim in the source · abstract, characters 137–242 · show in text ↑
e2

“T. afroharzianum T22 is essential in both compartments of the pot for promoting plant growth”

✓ located verbatim in the source · abstract, characters 428–520 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Inoculation with T. afroharzianum T22 induced sorghum root genes for nitrate and aquaporin transporters.

Taxon
sorghumSorghume3
Organ / stage
rootse3
Treatment
inoculation with T. afroharzianum T22e3
Interactor
T. afroharzianum T22Trichoderma afroharzianume3symbiont
Gene
nitrate and aquaporin transporterse3
Outcome
genes responsible for mineral transporte3
Direction
inducede3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e3

“RNA-seq analysis revealed that inoculation with T. afroharzianum T22 induced genes responsible for mineral transport (such as nitrate and aquaporin transporters), auxin response, sugar assimilation (hexokinase), and disease resistance (thaumatin) in sorghum roots”

✓ located verbatim in the source · abstract, characters 606–869 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Inoculation with T. afroharzianum T22 induced the sorghum root auxin response.

Taxon
sorghumSorghume3
Organ / stage
rootse3
Treatment
inoculation with T. afroharzianum T22e3
Interactor
T. afroharzianum T22Trichoderma afroharzianume3symbiont
Outcome
auxin responsee3
Direction
inducede3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e3

“RNA-seq analysis revealed that inoculation with T. afroharzianum T22 induced genes responsible for mineral transport (such as nitrate and aquaporin transporters), auxin response, sugar assimilation (hexokinase), and disease resistance (thaumatin) in sorghum roots”

✓ located verbatim in the source · abstract, characters 606–869 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Inoculation with T. afroharzianum T22 induced sorghum root sugar assimilation genes, hexokinase.

Taxon
sorghumSorghume3
Organ / stage
rootse3
Treatment
inoculation with T. afroharzianum T22e3
Interactor
T. afroharzianum T22Trichoderma afroharzianume3symbiont
Gene
hexokinasee3
Outcome
sugar assimilatione3
Direction
inducede3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e3

“RNA-seq analysis revealed that inoculation with T. afroharzianum T22 induced genes responsible for mineral transport (such as nitrate and aquaporin transporters), auxin response, sugar assimilation (hexokinase), and disease resistance (thaumatin) in sorghum roots”

✓ located verbatim in the source · abstract, characters 606–869 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Inoculation with T. afroharzianum T22 induced sorghum root disease resistance genes, thaumatin.

Taxon
sorghumSorghume3
Organ / stage
rootse3
Treatment
inoculation with T. afroharzianum T22e3
Interactor
T. afroharzianum T22Trichoderma afroharzianume3symbiont
Gene
thaumatine3
Outcome
disease resistancee3
Direction
inducede3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e3

“RNA-seq analysis revealed that inoculation with T. afroharzianum T22 induced genes responsible for mineral transport (such as nitrate and aquaporin transporters), auxin response, sugar assimilation (hexokinase), and disease resistance (thaumatin) in sorghum roots”

✓ located verbatim in the source · abstract, characters 606–869 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

T. afroharzianum T22 enriched Penicillium in sorghum roots.

Taxon
sorghumSorghume0
Organ / stage
rootse4
Treatment
T. afroharzianum T22e4
Interactor
PenicilliumPenicilliume4symbiont
Outcome
Penicilliume4
Direction
enrichinge4

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗
Penicillium
Penicillium · Interactor · picture from its Wikimedia Commons categoryMilo Manica · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“sorghum plants were grown for 5 weeks in pots of soil with or without inoculation of T. afroharzianum T22”

✓ located verbatim in the source · abstract, characters 137–242 · show in text ↑
e4

“the positive role of T. afroharzianum T22 in enriching Penicillium and Streptomyces while reducing disease-causing Fusarium in the roots”

✓ located verbatim in the source · abstract, characters 917–1053 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

T. afroharzianum T22 enriched Streptomyces in sorghum roots.

Taxon
sorghumSorghume0
Organ / stage
rootse4
Treatment
T. afroharzianum T22e4
Interactor
StreptomycesStreptomycese4symbiont
Outcome
Streptomycese4
Direction
enrichinge4

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗
Streptomyces
Streptomyces · Interactor · picture of the genus (one of its species)Public domain · Wikimedia Commons ↗

Verbatim

e0

“sorghum plants were grown for 5 weeks in pots of soil with or without inoculation of T. afroharzianum T22”

✓ located verbatim in the source · abstract, characters 137–242 · show in text ↑
e4

“the positive role of T. afroharzianum T22 in enriching Penicillium and Streptomyces while reducing disease-causing Fusarium in the roots”

✓ located verbatim in the source · abstract, characters 917–1053 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

T. afroharzianum T22 reduced disease-causing Fusarium in sorghum roots.

Taxon
sorghumSorghume0
Organ / stage
rootse4
Treatment
T. afroharzianum T22e4
Interactor
FusariumFusariume4pathogen
Second interactor
T. afroharzianum T22Trichoderma afroharzianume4biocontrol_agent
Outcome
disease-causing Fusariume4
Direction
reducinge4

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗
Fusarium
Fusarium · Interactor · picture of the genus (one of its species)Public domain · Wikimedia Commons ↗

Verbatim

e0

“sorghum plants were grown for 5 weeks in pots of soil with or without inoculation of T. afroharzianum T22”

✓ located verbatim in the source · abstract, characters 137–242 · show in text ↑
e4

“the positive role of T. afroharzianum T22 in enriching Penicillium and Streptomyces while reducing disease-causing Fusarium in the roots”

✓ located verbatim in the source · abstract, characters 917–1053 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Without Streptomyces griseus, the T. afroharzianum T22 consortium disrupted sorghum morphological features.

Taxon
sorghumSorghume0
Treatment
in the absence of Streptomyces griseuse5
Interactor
Streptomyces griseusStreptomyces griseuse5symbiont
Second interactor
T. afroharzianum T22Trichoderma afroharzianume5symbiont
Outcome
morphological featurese5
Direction
disruptede5

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗
Streptomyces griseus
Streptomyces griseus · InteractorDocwarhol · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“sorghum plants were grown for 5 weeks in pots of soil with or without inoculation of T. afroharzianum T22”

✓ located verbatim in the source · abstract, characters 137–242 · show in text ↑
e5

“showed disrupted morphological features in plants inoculated with T. afroharzianum T22 in the absence of Streptomyces griseus”

✓ located verbatim in the source · abstract, characters 1155–1280 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Without Penicillium chrysogenum, the consortium did not disrupt sorghum morphological features.

Taxon
sorghumSorghume0
Treatment
in the absence of Penicillium chrysogenume6
Interactor
Penicillium chrysogenumPenicillium chrysogenume6symbiont
Outcome
disruptione6

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗
Penicillium chrysogenum
Penicillium chrysogenum · InteractorCrulina 98 · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“sorghum plants were grown for 5 weeks in pots of soil with or without inoculation of T. afroharzianum T22”

✓ located verbatim in the source · abstract, characters 137–242 · show in text ↑
e6

“this disruption was not observed in the absence of Penicillium chrysogenum”

✓ located verbatim in the source · abstract, characters 1291–1365 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Streptomyces griseus acts as a helper microbe with T. afroharzianum T22 in the sorghum endosphere.

Taxon
sorghumSorghume7
Interactor
S. griseusStreptomyces griseuse7symbiont
Second interactor
T. afroharzianum T22Trichoderma afroharzianume7symbiont
Outcome
helper microbee7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗
Streptomyces griseus
Streptomyces griseus · InteractorDocwarhol · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e7

“S. griseus acts as a helper microbe in close association with T. afroharzianum T22 in the sorghum endosphere”

✓ located verbatim in the source · abstract, characters 1395–1503 · show in text ↑

Trichoderma afroharzianum · disease · SorghumPositive and negative results

2 papers: 1 positive, 1 negative or no effect

1 in the opposite direction

  1. no effect
See all 2 papers →

inoculation · molecular: expression · SorghumPositive and negative results

8 papers: 7 positive, 1 negative or no effect

6 papers in the same direction as this paper · 1 in the opposite direction

  1. no effect
  2. positive
  3. positive

4 papers more in this group

See all 8 papers →

inoculation · disease · SorghumPositive and negative results

28 papers: 13 positive, 15 negative or no effect

12 papers in the same direction as this paper · 14 in the opposite direction · 1 reporting no difference from an alternative

  1. no effect
  2. no effect
  3. no effect

24 papers more in this group

See all 28 papers →

inoculation · growth · SorghumPositive and negative results

76 papers: 65 positive, 11 negative or no effect

64 papers in the same direction as this paper · 9 in the opposite direction · 2 reporting no difference from an alternative

  1. negative
  2. negative
  3. negative

72 papers more in this group

See all 76 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.