Paper · 2024 · Current Plant Biology

Combining transcriptome and untargeted metabolome analysis to reveal the potential mechanism of 24-epibrassinolide alleviating low light stress in tomato

Jiawei Liu; Yongxiang Huang; Sijia Liu; et al.

6
claims
14
verbatim quotes
5
citations
2
research areas
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Open access · cc-by-nc-nd

Abstract

Low light stress seriously affects the growth and yield of crops and the phytohormone brassinosteroid (BRs) plays a vital role in regulating plant adaptation to low light conditions. However, the molecular mechanism underlying this process remains largely unknown. In this study, we showed that exogenous BR effectively alleviated damages to photosynthesis and antioxidant systems, improved the plant biomass under low light stress mimicking treatments in tomato (Lycopersicon esculentum Mill.). Comparative transcriptome profiling analysis revealed that genes related with photosynthesis and Calvin cycle pathways were enriched among the differentially expressed genes (DEG) co-regulated by low light stress and BR. The combination of transcriptome and metabolome analysis showed that BR could mitigate the down-regulation of photosynthesis and Calvin cycle caused by low light stress, and partially restore the up-regulation of Glycolysis / Gluconeogenesis and tricarboxylic acid (TCA) cycle through transcriptional and metabolic reprogramming to alleviate the effects of low light stress. Moreover, we further identified the crucial transcription factors, SIEPR1 and SIERF059, and their potential target genes involved in the regulation of low light stress alleviation mediated by BR signaling. Our results shed new light on the molecular mechanisms underlying the alleviation of low light stress by BR.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 6

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Exogenous brassinosteroid alleviated low-light damage to photosynthesis and antioxidant systems in tomato.

Treatment
exogenous BRe1
Outcome
damages to photosynthesis and antioxidant systemse1
Direction
alleviatede1
Comparator
low light stresse2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“exogenous BR effectively alleviated damages to photosynthesis and antioxidant systems”

✓ located verbatim in the source · abstract, characters 295–380 · show in text ↑
e2

“low light stress mimicking treatments in tomato (Lycopersicon esculentum Mill.)”

✓ located verbatim in the source · abstract, characters 415–494 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Exogenous brassinosteroid improved plant biomass of tomato under low light stress.

Treatment
exogenous BRe1
Outcome
plant biomasse3
Direction
improvede3
Comparator
low light stresse2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“exogenous BR effectively alleviated damages to photosynthesis and antioxidant systems”

✓ located verbatim in the source · abstract, characters 295–380 · show in text ↑
e2

“low light stress mimicking treatments in tomato (Lycopersicon esculentum Mill.)”

✓ located verbatim in the source · abstract, characters 415–494 · show in text ↑
e3

“improved the plant biomass under low light stress mimicking treatments”

✓ located verbatim in the source · abstract, characters 382–452 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Genes related with photosynthesis and the Calvin cycle were enriched among differentially expressed genes co-regulated by low light stress and brassinosteroid in tomato.

Outcome
genes related with photosynthesis and Calvin cycle pathwayse4
Direction
enrichede4
Qualifier
co-regulated by low light stress and BRe4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e2

“low light stress mimicking treatments in tomato (Lycopersicon esculentum Mill.)”

✓ located verbatim in the source · abstract, characters 415–494 · show in text ↑
e4

“genes related with photosynthesis and Calvin cycle pathways were enriched among the differentially expressed genes (DEG) co-regulated by low light stress and BR”

✓ located verbatim in the source · abstract, characters 555–715 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Brassinosteroid mitigated the down-regulation of photosynthesis and the Calvin cycle caused by low light stress in tomato.

Treatment
BRe5
Outcome
down-regulation of photosynthesis and Calvin cyclee5
Direction
mitigatee5
Comparator
low light stresse5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e2

“low light stress mimicking treatments in tomato (Lycopersicon esculentum Mill.)”

✓ located verbatim in the source · abstract, characters 415–494 · show in text ↑
e5

“BR could mitigate the down-regulation of photosynthesis and Calvin cycle caused by low light stress”

✓ located verbatim in the source · abstract, characters 786–885 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Brassinosteroid partially restored the up-regulation of glycolysis/gluconeogenesis and the TCA cycle under low light stress in tomato.

Treatment
BRe5
Outcome
up-regulation of Glycolysis / Gluconeogenesis and tricarboxylic acid (TCA) cyclee6
Direction
partially restoree6
Comparator
low light stresse5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e2

“low light stress mimicking treatments in tomato (Lycopersicon esculentum Mill.)”

✓ located verbatim in the source · abstract, characters 415–494 · show in text ↑
e5

“BR could mitigate the down-regulation of photosynthesis and Calvin cycle caused by low light stress”

✓ located verbatim in the source · abstract, characters 786–885 · show in text ↑
e6

“partially restore the up-regulation of Glycolysis / Gluconeogenesis and tricarboxylic acid (TCA) cycle”

✓ located verbatim in the source · abstract, characters 891–993 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

The transcription factors SIEPR1 and SIERF059 were identified as crucial regulators of brassinosteroid-mediated low light stress alleviation in tomato.

Gene
SIEPR1 and SIERF059e7
Outcome
regulation of low light stress alleviation mediated by BR signalinge7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e2

“low light stress mimicking treatments in tomato (Lycopersicon esculentum Mill.)”

✓ located verbatim in the source · abstract, characters 415–494 · show in text ↑
e7

“we further identified the crucial transcription factors, SIEPR1 and SIERF059, and their potential target genes involved in the regulation of low light stress alleviation mediated by BR signaling”

✓ located verbatim in the source · abstract, characters 1102–1296 · show in text ↑

brassinolide · growth · Solanum lycopersicum (tomato)Positive and negative results

5 papers: 4 positive, 1 negative or no effect

3 papers in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
  3. positive

1 paper more in this group

See all 5 papers →

brassinolide · physiology: photosynthesis · Solanum lycopersicum (tomato)Results agree

4 papers: 4 positive, 0 negative or no effect

3 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive
See all 4 papers →

brassinolide · molecular: expression · Solanum lycopersicum (tomato)Results agree

4 papers: 4 positive, 0 negative or no effect

3 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive
See all 4 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.