Paper · 2022 · Frontiers in Plant Science

Proteome Analysis of the Soybean Nodule Phosphorus Response Mechanism and Characterization of Stress-Induced Ribosome Structural and Protein Expression Changes

Yubo Yao; Hongmei Yuan; Guangwen Wu; et al.

3
claims
7
verbatim quotes
12
citations
2
research areas
✓
Open access · cc-by

Abstract

In agroecosystems, a plant-usable form of nitrogen is mainly generated by legume-based biological nitrogen fixation, a process that requires phosphorus (P) as an essential nutrient. To investigate the physiological mechanism whereby phosphorus influences soybean nodule nitrogen fixation, soybean root nodules were exposed to four phosphate levels: 1 mg/L (P stress), 11 mg/L (P stress), 31 mg/L (Normal P), and 61 mg/L (High P) then proteome analysis of nodules was conducted to identify phosphorus-associated proteome changes. We found that phosphorus stress-induced ribosomal protein structural changes were associated with altered key root nodule protein synthesis profiles. Importantly, up-regulated expression of peroxidase was observed as an important phosphorus stress-induced nitrogen fixation-associated adaptation that supported two nodule-associated activities: scavenging of reactive oxygen species (ROS) and cell wall growth. In addition, phosphorus transporter (PT) and purple acid phosphatase (PAPs) were up-regulated that regulated phosphorus transport and utilization to maintain phosphorus balance and nitrogen fixation function in phosphorus-stressed root nodules.

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Claims 3

Associationobservedoriginal resultmeasured

Claim · model-written summary

Phosphorus stress-induced ribosomal protein structural changes were associated with altered soybean nodule protein synthesis profiles.

Taxon
soybeanGlycine maxe1
Treatment
phosphorus stresse2
Outcome
protein synthesis profilese2
Direction
alterede2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e1

“soybean root nodules were exposed to four phosphate levels: 1 mg/L (P stress), 11 mg/L (P stress), 31 mg/L (Normal P), and 61 mg/L (High P)”

✓ located verbatim in the source · abstract, characters 289–428 · show in text ↑
e2

“phosphorus stress-induced ribosomal protein structural changes were associated with altered key root nodule protein synthesis profiles”

✓ located verbatim in the source · abstract, characters 543–677 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Phosphorus stress up-regulated peroxidase expression in soybean nodules as a nitrogen fixation-associated adaptation.

Taxon
soybeanGlycine maxe1
Treatment
phosphorus stresse3
Gene
peroxidasee3
Outcome
expression of peroxidasee3
Direction
up-regulatede3
Comparator
Normal Pe1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e1

“soybean root nodules were exposed to four phosphate levels: 1 mg/L (P stress), 11 mg/L (P stress), 31 mg/L (Normal P), and 61 mg/L (High P)”

✓ located verbatim in the source · abstract, characters 289–428 · show in text ↑
e3

“up-regulated expression of peroxidase was observed as an important phosphorus stress-induced nitrogen fixation-associated adaptation”

✓ located verbatim in the source · abstract, characters 692–824 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Under phosphorus stress, phosphorus transporter and purple acid phosphatase were up-regulated in soybean nodules.

Taxon
soybeanGlycine maxe1
Treatment
phosphorus-stressede5
Gene
purple acid phosphatase (PAPs)e4
Outcome
phosphorus transporter (PT) and purple acid phosphatase (PAPs)e4
Direction
up-regulatede4

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e1

“soybean root nodules were exposed to four phosphate levels: 1 mg/L (P stress), 11 mg/L (P stress), 31 mg/L (Normal P), and 61 mg/L (High P)”

✓ located verbatim in the source · abstract, characters 289–428 · show in text ↑
e4

“phosphorus transporter (PT) and purple acid phosphatase (PAPs) were up-regulated”

✓ located verbatim in the source · abstract, characters 953–1033 · show in text ↑
e5

“in phosphorus-stressed root nodules”

✓ located verbatim in the source · abstract, characters 1148–1183 · show in text ↑

phosphorus · molecular: expression · Glycine max (soybean)Positive and negative results

13 papers: 7 positive, 6 negative or no effect

6 papers in the same direction as this paper · 6 in the opposite direction

  1. positive
  2. positive
  3. positive

9 papers more in this group

See all 13 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.