Paper · 2022 · Plant Cell & Environment

The AP2/ERF transcription factor LATE FLOWERING SEMI‐DWARF suppresses long‐day‐dependent repression of flowering

Yejin Shim; Chaemyeong Lim; Gayeong Seong; et al.

7
claims
14
verbatim quotes
32
citations
2
research areas
—
Not open access

Abstract

The vegetative-to-reproductive transition requires the complex, coordinated activities of many transcriptional regulators. Rice (Oryza sativa), a facultative short-day (SD) plant, flowers early under SD (≤10 h light/day) and late under long-day (LD; ≥14 h light/day) conditions. Here, we demonstrate that rice LATE FLOWERING SEMI-DWARF (LFS) encodes an APETALA2/ETHYLENE RESPONSIVE FACTOR (AP2/ERF) transcription factor that promotes flowering under non-inductive LD conditions. LFS showed diurnal expression peaking at dawn, and transcript levels increased gradually until heading. Mutation of LFS delayed flowering under LD but not SD conditions. Expression of the LD-specific floral repressor gene LEAFY COTYLEDON2 AND FUSCA3-LIKE 1 (OsLFL1) was upregulated in lfs knockout mutants, and LFS bound directly to the GCC-rich motif in the OsLFL1 promoter, repressing OsLFL1 expression. This suggests that increased LFS activity during vegetative growth gradually attenuates OsLFL1 activity. Subsequent increases in Early heading date 1, Heading date 3a, and RICE FLOWERING LOCUS T 1 expression result in flowering under non-inductive LD conditions. LFS did not affect the expression of other OsLFL1 regulators, including OsMADS50, OsMADS56, VERNALIZATION INSENSITIVE3-LIKE 2, and GERMINATION DEFECTIVE 1, or interact with them. Our results demonstrate the novel roles of LFS in inducing flowering under natural LD conditions.

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Claims 7

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Mutation of LFS delayed flowering under long-day conditions.

Treatment
Mutation of LFSe1
Outcome
floweringe1
Direction
delayede1
Qualifier
under LDe1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Rice (Oryza sativa), a facultative short-day (SD) plant”

✓ located verbatim in the source · abstract, characters 123–178 · show in text ↑
e1

“Mutation of LFS delayed flowering under LD but not SD conditions”

✓ located verbatim in the source · abstract, characters 583–647 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Mutation of LFS did not change flowering under short-day conditions.

Treatment
Mutation of LFSe1
Outcome
floweringe1
Direction
no_changeinferrede1
Qualifier
SD conditionse1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Rice (Oryza sativa), a facultative short-day (SD) plant”

✓ located verbatim in the source · abstract, characters 123–178 · show in text ↑
e1

“Mutation of LFS delayed flowering under LD but not SD conditions”

✓ located verbatim in the source · abstract, characters 583–647 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

LFS transcript showed diurnal expression peaking at dawn and increased gradually until heading in rice.

Gene
LFSe2
Outcome
diurnal expressione2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Rice (Oryza sativa), a facultative short-day (SD) plant”

✓ located verbatim in the source · abstract, characters 123–178 · show in text ↑
e2

“LFS showed diurnal expression peaking at dawn, and transcript levels increased gradually until heading”

✓ located verbatim in the source · abstract, characters 479–581 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

OsLFL1 expression was upregulated in lfs knockout mutants of rice.

Treatment
lfs knockout mutantse3
Gene
OsLFL1e3
Outcome
Expressione3
Direction
upregulatede3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Rice (Oryza sativa), a facultative short-day (SD) plant”

✓ located verbatim in the source · abstract, characters 123–178 · show in text ↑
e3

“Expression of the LD-specific floral repressor gene LEAFY COTYLEDON2 AND FUSCA3-LIKE 1 (OsLFL1) was upregulated in lfs knockout mutants”

✓ located verbatim in the source · abstract, characters 649–784 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

LFS binds directly to the GCC-rich motif in the OsLFL1 promoter and represses OsLFL1 expression in rice.

Gene
LFSe4
Outcome
OsLFL1 expressione4
Qualifier
bound directly to the GCC-rich motif in the OsLFL1 promotere4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Rice (Oryza sativa), a facultative short-day (SD) plant”

✓ located verbatim in the source · abstract, characters 123–178 · show in text ↑
e4

“LFS bound directly to the GCC-rich motif in the OsLFL1 promoter, repressing OsLFL1 expression”

✓ located verbatim in the source · abstract, characters 790–883 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Increased expression of Early heading date 1, Heading date 3a and RICE FLOWERING LOCUS T 1 results in flowering under non-inductive long days in rice.

Gene
Early heading date 1e5
Outcome
flowering under non-inductive LD conditionse5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Rice (Oryza sativa), a facultative short-day (SD) plant”

✓ located verbatim in the source · abstract, characters 123–178 · show in text ↑
e5

“Subsequent increases in Early heading date 1, Heading date 3a, and RICE FLOWERING LOCUS T 1 expression result in flowering under non-inductive LD conditions”

✓ located verbatim in the source · abstract, characters 990–1146 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

LFS did not affect expression of other OsLFL1 regulators, nor interact with them, in rice.

Treatment
LFSe6
Outcome
expression of other OsLFL1 regulatorse6
Direction
did not affecte6
Qualifier
or interact with theme6

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Rice (Oryza sativa), a facultative short-day (SD) plant”

✓ located verbatim in the source · abstract, characters 123–178 · show in text ↑
e6

“LFS did not affect the expression of other OsLFL1 regulators, including OsMADS50, OsMADS56, VERNALIZATION INSENSITIVE3-LIKE 2, and GERMINATION DEFECTIVE 1, or interact with them”

✓ located verbatim in the source · abstract, characters 1148–1325 · show in text ↑

stage · phenology · Oryza sativa (rice)Positive and negative results

5 papers: 2 positive, 3 negative or no effect

2 papers in the same direction as this paper · 2 in the opposite direction

  1. positive
  2. positive
  3. negative

1 paper more in this group

See all 5 papers →

loss of function · phenology · Oryza sativa (rice)Positive and negative results

16 papers: 3 positive, 13 negative or no effect

12 papers in the same direction as this paper · 3 in the opposite direction

  1. positive
  2. positive
  3. positive

12 papers more in this group

See all 16 papers →

stage · molecular: expression · Oryza sativa (rice)Results agree

2 papers: 0 positive, 2 negative or no effect

1 paper in the same direction as this paper

  1. negative
See all 2 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.