Paper · 2022 · Frontiers in Microbiology

A New Species in Pseudophialophora From Wild Rice and Beneficial Potential

Jia-Nan Zhu; Yi-Jun Yu; Meng-Di Dai; et al.

15
claims
23
verbatim quotes
15
citations
5
research areas
✓
Open access · cc-by

Abstract

Wild rice ( Oryza granulata ) is a natural resource pool containing abundant unknown endophytic fungi species. There are few reports on the endophytic fungi in wild rice. Here, one isolate recovered from wild rice roots was identified as a new species Pseudophialophora oryzae sp. nov based on the molecular phylogeny and morphological characteristics. Fluorescent protein-expressing P. oryzae was used to monitor the fungal colonization pattern. Hyphae invaded the epidermis to the inner cortex but not into the root stele. The inoculation of P. oryzae promoted the rice growth, with the growth parameters of chlorophyll content, shoot height, root length, fresh shoot weight, fresh root weight and dry weight increasing by 24.10, 35.32, 19.35, 90.00, 33.3, and 79.17%, respectively. P. oryzae induced up-regulation of nitrate transporter OsPTR9 and potassium transporter OsHAK16 by 7.28 ± 0.84 and 2.57 ± 0.80 folds, promoting nitrogen and potassium elements absorption. In addition, P. oryzae also conferred a systemic resistance against rice blast, showing a 72.65 and 75.63% control rate in sterile plates and potting conditions. This systemic resistance was mediated by the strongly up-regulated expression of resistance-related genes NAC , OsSAUR2 , OsWRKY71 , EL5 , and PR1 α. Since P. oryzae can promote rice growth, biomass and induce systemic disease resistance, it can be further developed as a new biogenic agent for agricultural production, providing a new approach for biocontrol of rice blast.

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Claims 15

Observationobservedoriginal resultbasis n/a

Claim · model-written summary

A root endophyte from wild rice was identified as the new species Pseudophialophora oryzae.

Taxon
wild riceOryzeaee0
Organ / stage
rootse0
Interactor
Pseudophialophora oryzaee0symbiont
Outcome
a new species Pseudophialophora oryzae sp. nove0

Verbatim

e0

“one isolate recovered from wild rice roots was identified as a new species Pseudophialophora oryzae sp. nov based on the molecular phylogeny and morphological characteristics”

✓ located verbatim in the source · abstract, characters 177–351 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

P. oryzae hyphae colonized the rice epidermis and inner cortex but did not enter the root stele.

Taxon
Wild riceOryzeaet0
Organ / stage
root stelee0
Interactor
P. oryzaee1symbiont
Outcome
Hyphae invaded the epidermis to the inner cortex but not into the root stele.e0

Verbatim

e0

“Hyphae invaded the epidermis to the inner cortex but not into the root stele.”

✓ located verbatim in the source · abstract, characters 447–524 · show in text ↑
e1

“Fluorescent protein-expressing P. oryzae was used to monitor the fungal colonization pattern.”

✓ located verbatim in the source · abstract, characters 353–446 · show in text ↑
t0

“Wild rice ( Oryza granulata )”

✓ located verbatim in the source · abstract, characters 0–29 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

P. oryzae inoculation increased rice chlorophyll content by 24.10.

Treatment
inoculation of P. oryzaee0
Interactor
P. oryzaee0symbiont
Outcome
chlorophyll contente0
Direction
increasinge0
Value
24.10e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The inoculation of P. oryzae promoted the rice growth, with the growth parameters of chlorophyll content, shoot height, root length, fresh shoot weight, fresh root weight and dry weight increasing by 24.10, 35.32, 19.35, 90.00, 33.3, and 79.17%, respectively.”

✓ located verbatim in the source · abstract, characters 525–784 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

P. oryzae inoculation increased rice shoot height by 35.32.

Treatment
inoculation of P. oryzaee0
Interactor
P. oryzaee0symbiont
Outcome
shoot heighte0
Direction
increasinge0
Value
35.32e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The inoculation of P. oryzae promoted the rice growth, with the growth parameters of chlorophyll content, shoot height, root length, fresh shoot weight, fresh root weight and dry weight increasing by 24.10, 35.32, 19.35, 90.00, 33.3, and 79.17%, respectively.”

✓ located verbatim in the source · abstract, characters 525–784 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

P. oryzae inoculation increased rice root length by 19.35.

Treatment
inoculation of P. oryzaee0
Interactor
P. oryzaee0symbiont
Outcome
root lengthe0
Direction
increasinge0
Value
19.35e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The inoculation of P. oryzae promoted the rice growth, with the growth parameters of chlorophyll content, shoot height, root length, fresh shoot weight, fresh root weight and dry weight increasing by 24.10, 35.32, 19.35, 90.00, 33.3, and 79.17%, respectively.”

✓ located verbatim in the source · abstract, characters 525–784 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

P. oryzae inoculation increased rice fresh shoot weight by 90.00.

Treatment
inoculation of P. oryzaee0
Interactor
P. oryzaee0symbiont
Outcome
fresh shoot weighte0
Direction
increasinge0
Value
90.00e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The inoculation of P. oryzae promoted the rice growth, with the growth parameters of chlorophyll content, shoot height, root length, fresh shoot weight, fresh root weight and dry weight increasing by 24.10, 35.32, 19.35, 90.00, 33.3, and 79.17%, respectively.”

✓ located verbatim in the source · abstract, characters 525–784 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

P. oryzae inoculation increased rice fresh root weight by 33.3.

Treatment
inoculation of P. oryzaee0
Interactor
P. oryzaee0symbiont
Outcome
fresh root weighte0
Direction
increasinge0
Value
33.3e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The inoculation of P. oryzae promoted the rice growth, with the growth parameters of chlorophyll content, shoot height, root length, fresh shoot weight, fresh root weight and dry weight increasing by 24.10, 35.32, 19.35, 90.00, 33.3, and 79.17%, respectively.”

✓ located verbatim in the source · abstract, characters 525–784 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

P. oryzae inoculation increased rice dry weight by 79.17%.

Treatment
inoculation of P. oryzaee0
Interactor
P. oryzaee0symbiont
Outcome
dry weighte0
Direction
increasinge0
Value
79.17%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The inoculation of P. oryzae promoted the rice growth, with the growth parameters of chlorophyll content, shoot height, root length, fresh shoot weight, fresh root weight and dry weight increasing by 24.10, 35.32, 19.35, 90.00, 33.3, and 79.17%, respectively.”

✓ located verbatim in the source · abstract, characters 525–784 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

P. oryzae increased expression of OsPTR9 by 7.28 ± 0.84 folds.

Treatment
P. oryzaee0
Interactor
P. oryzaee0symbiont
Gene
OsPTR9e0
Outcome
up-regulatione0
Direction
up-regulatione0
Value
7.28 ± 0.84e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“P. oryzae induced up-regulation of nitrate transporter OsPTR9 and potassium transporter OsHAK16 by 7.28 ± 0.84 and 2.57 ± 0.80 folds, promoting nitrogen and potassium elements absorption.”

✓ located verbatim in the source · abstract, characters 785–972 · show in text ↑
e1

“The inoculation of P. oryzae promoted the rice growth”

✓ located verbatim in the source · abstract, characters 525–578 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

P. oryzae increased expression of OsHAK16 by 2.57 ± 0.80 folds folds.

Treatment
P. oryzaee0
Interactor
P. oryzaee0symbiont
Gene
OsHAK16e0
Outcome
up-regulatione0
Direction
up-regulatione0
Value
2.57 ± 0.80 foldse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“P. oryzae induced up-regulation of nitrate transporter OsPTR9 and potassium transporter OsHAK16 by 7.28 ± 0.84 and 2.57 ± 0.80 folds, promoting nitrogen and potassium elements absorption.”

✓ located verbatim in the source · abstract, characters 785–972 · show in text ↑
e1

“The inoculation of P. oryzae promoted the rice growth”

✓ located verbatim in the source · abstract, characters 525–578 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

P. oryzae promoted nitrogen and potassium absorption in rice.

Interactor
P. oryzaee0symbiont
Gene
OsPTR9e0
Outcome
nitrogen and potassium elements absorptione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“P. oryzae induced up-regulation of nitrate transporter OsPTR9 and potassium transporter OsHAK16 by 7.28 ± 0.84 and 2.57 ± 0.80 folds, promoting nitrogen and potassium elements absorption.”

✓ located verbatim in the source · abstract, characters 785–972 · show in text ↑
e1

“The inoculation of P. oryzae promoted the rice growth”

✓ located verbatim in the source · abstract, characters 525–578 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

P. oryzae controlled rice blast by 72.65 under sterile plates.

Treatment
P. oryzaee0
Interactor
P. oryzaee0symbiont
Outcome
rice blaste0
Direction
controle0
Value
72.65e0
Setting
sterile platese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“P. oryzae also conferred a systemic resistance against rice blast, showing a 72.65 and 75.63% control rate in sterile plates and potting conditions.”

✓ located verbatim in the source · abstract, characters 986–1134 · show in text ↑
e1

“The inoculation of P. oryzae promoted the rice growth”

✓ located verbatim in the source · abstract, characters 525–578 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

P. oryzae controlled rice blast by 75.63% under potting conditions.

Treatment
P. oryzaee0
Interactor
P. oryzaee0symbiont
Outcome
rice blaste0
Direction
controle0
Value
75.63%e0
Setting
potting conditionse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“P. oryzae also conferred a systemic resistance against rice blast, showing a 72.65 and 75.63% control rate in sterile plates and potting conditions.”

✓ located verbatim in the source · abstract, characters 986–1134 · show in text ↑
e1

“The inoculation of P. oryzae promoted the rice growth”

✓ located verbatim in the source · abstract, characters 525–578 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

Resistance-related genes were strongly up-regulated in P. oryzae-associated rice.

Interactor
P. oryzaee1symbiont
Gene
NACe0
Outcome
strongly up-regulated expressione0
Qualifier
systemic resistancee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“This systemic resistance was mediated by the strongly up-regulated expression of resistance-related genes NAC , OsSAUR2 , OsWRKY71 , EL5 , and PR1 α.”

✓ located verbatim in the source · abstract, characters 1135–1284 · show in text ↑
e1

“P. oryzae also conferred a systemic resistance against rice blast”

✓ located verbatim in the source · abstract, characters 986–1051 · show in text ↑
Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors propose P. oryzae as a biogenic agent for agricultural production and rice blast biocontrol.

Interactor
P. oryzaee0symbiont
Outcome
new biogenic agent for agricultural productione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Since P. oryzae can promote rice growth, biomass and induce systemic disease resistance, it can be further developed as a new biogenic agent for agricultural production, providing a new approach for biocontrol of rice blast.”

✓ located verbatim in the source · abstract, characters 1285–1509 · show in text ↑

inoculation · physiology: pigments · Oryza sativa (rice)Positive and negative results

67 papers: 64 positive, 3 negative or no effect

63 papers in the same direction as this paper · 3 in the opposite direction

  1. positive
  2. negative
  3. negative

63 papers more in this group

See all 67 papers →

inoculation · growth · Oryza sativa (rice)Positive and negative results

399 papers: 362 positive, 37 negative or no effect

361 papers in the same direction as this paper · 34 in the opposite direction · 3 reporting no difference from an alternative

  1. positive
  2. positive
  3. no effect

395 papers more in this group

See all 399 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.