Paper · 2020 · Journal of Experimental Botany

The basic helix-loop-helix transcription factor bHLH95 affects fruit ripening and multiple metabolisms in tomato

Lincheng Zhang; Jing Kang; Qiaoli Xie; et al.

14
claims
28
verbatim quotes
62
citations
3
research areas
✓
Open access

Abstract

Ethylene signaling pathways regulate several physiological alterations that occur during tomato fruit ripening, such as changes in colour and flavour. The mechanisms underlying the transcriptional regulation of genes in these pathways remain unclear, although the role of the MADS-box transcription factor RIN has been widely reported. Here, we describe a bHLH transcription factor, SlbHLH95, whose transcripts accumulated abundantly in breaker+4 and breaker+7 fruits compared with rin (ripening inhibitor) and Nr (never ripe) mutants. Moreover, the promoter activity of SlbHLH95 was regulated by RIN in vivo. Suppression of SlbHLH95 resulted in reduced sensitivity to ethylene, decreased accumulation of total carotenoids, and lowered glutathione content, and inhibited the expression of fruit ripening- and glutathione metabolism-related genes. Conversely, up-regulation of SlbHLH95 in wild-type tomato resulted in higher sensitivity to ethylene, increased accumulation of total carotenoids, slightly premature ripening, and elevated accumulation of glutathione, soluble sugar, and starch. Notably, overexpression of SlbHLH95 in rin led to the up-regulated expression of fruit ripening-related genes (FUL1, FUL2, SAUR69, ERF4, and CNR) and multiple glutathione metabolism-related genes (GSH1, GSH2, GSTF1, and GSTF5). These results clarified that SlbHLH95 participates in the regulation of fruit ripening and affects ethylene sensitivity and multiple metabolisms targeted by RIN in tomato.

Abstract from the paper’s OpenAlex record, shown for indexing and research. Copyright remains with the authors or the publisher. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 14

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

SlbHLH95 transcripts accumulated more abundantly in breaker+4 and breaker+7 fruits than in rin and Nr mutants.

Organ / stage
breaker+4 and breaker+7 fruitse0
Gene
SlbHLH95e0
Outcome
transcripts accumulated abundantlye0
Direction
abundantlye0
Comparator
rin (ripening inhibitor) and Nr (never ripe) mutantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“SlbHLH95, whose transcripts accumulated abundantly in breaker+4 and breaker+7 fruits compared with rin (ripening inhibitor) and Nr (never ripe) mutants.”

✓ located verbatim in the source · abstract, characters 383–535 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 106–112 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

RIN regulated SlbHLH95 promoter activity in vivo.

Gene
RINe0
Outcome
promoter activity of SlbHLH95e0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the promoter activity of SlbHLH95 was regulated by RIN in vivo.”

✓ located verbatim in the source · abstract, characters 546–609 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 106–112 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Suppression of SlbHLH95 caused reduced sensitivity to ethylene in tomato.

Treatment
Suppression of SlbHLH95e0
Gene
SlbHLH95e0
Outcome
sensitivity to ethylenee0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Suppression of SlbHLH95 resulted in reduced sensitivity to ethylene, decreased accumulation of total carotenoids, and lowered glutathione content, and inhibited the expression of fruit ripening- and glutathione metabolism-related genes.”

✓ located verbatim in the source · abstract, characters 610–846 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 106–112 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Suppression of SlbHLH95 caused decreased accumulation of total carotenoids in tomato.

Treatment
Suppression of SlbHLH95e0
Gene
SlbHLH95e0
Outcome
accumulation of total carotenoidse0
Direction
decreasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Suppression of SlbHLH95 resulted in reduced sensitivity to ethylene, decreased accumulation of total carotenoids, and lowered glutathione content, and inhibited the expression of fruit ripening- and glutathione metabolism-related genes.”

✓ located verbatim in the source · abstract, characters 610–846 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 106–112 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Suppression of SlbHLH95 caused lowered glutathione content in tomato.

Treatment
Suppression of SlbHLH95e0
Gene
SlbHLH95e0
Outcome
glutathione contente0
Direction
lowerede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Suppression of SlbHLH95 resulted in reduced sensitivity to ethylene, decreased accumulation of total carotenoids, and lowered glutathione content, and inhibited the expression of fruit ripening- and glutathione metabolism-related genes.”

✓ located verbatim in the source · abstract, characters 610–846 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 106–112 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Suppression of SlbHLH95 caused inhibited expression of fruit ripening- and glutathione metabolism-related genes in tomato.

Treatment
Suppression of SlbHLH95e0
Gene
SlbHLH95e0
Outcome
expression of fruit ripening- and glutathione metabolism-related genese0
Direction
inhibitede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Suppression of SlbHLH95 resulted in reduced sensitivity to ethylene, decreased accumulation of total carotenoids, and lowered glutathione content, and inhibited the expression of fruit ripening- and glutathione metabolism-related genes.”

✓ located verbatim in the source · abstract, characters 610–846 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 106–112 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

up-regulation of SlbHLH95 caused higher sensitivity to ethylene in tomato.

Treatment
up-regulation of SlbHLH95e0
Gene
SlbHLH95e0
Outcome
sensitivity to ethylenee0
Direction
highere0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“up-regulation of SlbHLH95 in wild-type tomato resulted in higher sensitivity to ethylene, increased accumulation of total carotenoids, slightly premature ripening, and elevated accumulation of glutathione, soluble sugar, and starch.”

✓ located verbatim in the source · abstract, characters 859–1091 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 106–112 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

up-regulation of SlbHLH95 caused increased accumulation of total carotenoids in tomato.

Treatment
up-regulation of SlbHLH95e0
Gene
SlbHLH95e0
Outcome
accumulation of total carotenoidse0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“up-regulation of SlbHLH95 in wild-type tomato resulted in higher sensitivity to ethylene, increased accumulation of total carotenoids, slightly premature ripening, and elevated accumulation of glutathione, soluble sugar, and starch.”

✓ located verbatim in the source · abstract, characters 859–1091 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 106–112 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

up-regulation of SlbHLH95 caused premature ripening in tomato.

Treatment
up-regulation of SlbHLH95e0
Gene
SlbHLH95e0
Outcome
ripeninge0
Direction
prematuree0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“up-regulation of SlbHLH95 in wild-type tomato resulted in higher sensitivity to ethylene, increased accumulation of total carotenoids, slightly premature ripening, and elevated accumulation of glutathione, soluble sugar, and starch.”

✓ located verbatim in the source · abstract, characters 859–1091 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 106–112 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

up-regulation of SlbHLH95 caused elevated accumulation of glutathione in tomato.

Treatment
up-regulation of SlbHLH95e0
Gene
SlbHLH95e0
Outcome
accumulation of glutathionee0
Direction
elevatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“up-regulation of SlbHLH95 in wild-type tomato resulted in higher sensitivity to ethylene, increased accumulation of total carotenoids, slightly premature ripening, and elevated accumulation of glutathione, soluble sugar, and starch.”

✓ located verbatim in the source · abstract, characters 859–1091 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 106–112 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

up-regulation of SlbHLH95 caused elevated soluble sugar in tomato.

Treatment
up-regulation of SlbHLH95e0
Gene
SlbHLH95e0
Outcome
soluble sugare0
Direction
elevatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“up-regulation of SlbHLH95 in wild-type tomato resulted in higher sensitivity to ethylene, increased accumulation of total carotenoids, slightly premature ripening, and elevated accumulation of glutathione, soluble sugar, and starch.”

✓ located verbatim in the source · abstract, characters 859–1091 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 106–112 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

up-regulation of SlbHLH95 caused elevated starch in tomato.

Treatment
up-regulation of SlbHLH95e0
Gene
SlbHLH95e0
Outcome
starche0
Direction
elevatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“up-regulation of SlbHLH95 in wild-type tomato resulted in higher sensitivity to ethylene, increased accumulation of total carotenoids, slightly premature ripening, and elevated accumulation of glutathione, soluble sugar, and starch.”

✓ located verbatim in the source · abstract, characters 859–1091 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 106–112 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

SlbHLH95 overexpression in rin up-regulated expression of fruit ripening-related genes (FUL1, FUL2, SAUR69, ERF4, and CNR).

Material
rine0
Treatment
overexpression of SlbHLH95e0
Gene
SlbHLH95e0
Outcome
fruit ripening-related genes (FUL1, FUL2, SAUR69, ERF4, and CNR)e0
Direction
up-regulatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“overexpression of SlbHLH95 in rin led to the up-regulated expression of fruit ripening-related genes (FUL1, FUL2, SAUR69, ERF4, and CNR) and multiple glutathione metabolism-related genes (GSH1, GSH2, GSTF1, and GSTF5).”

✓ located verbatim in the source · abstract, characters 1101–1319 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 106–112 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

SlbHLH95 overexpression in rin up-regulated expression of glutathione metabolism-related genes (GSH1, GSH2, GSTF1, and GSTF5).

Material
rine0
Treatment
overexpression of SlbHLH95e0
Gene
SlbHLH95e0
Outcome
glutathione metabolism-related genes (GSH1, GSH2, GSTF1, and GSTF5)e0
Direction
up-regulatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“overexpression of SlbHLH95 in rin led to the up-regulated expression of fruit ripening-related genes (FUL1, FUL2, SAUR69, ERF4, and CNR) and multiple glutathione metabolism-related genes (GSH1, GSH2, GSTF1, and GSTF5).”

✓ located verbatim in the source · abstract, characters 1101–1319 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 106–112 · show in text ↑

loss of function · physiology: pigments · Solanum lycopersicum (tomato)Positive and negative results

22 papers: 5 positive, 17 negative or no effect

16 papers in the same direction as this paper · 5 in the opposite direction

  1. negative
  2. positive
  3. positive

18 papers more in this group

See all 22 papers →

loss of function · physiology: hormones · Solanum lycopersicum (tomato)Positive and negative results

32 papers: 6 positive, 26 negative or no effect

25 papers in the same direction as this paper · 6 in the opposite direction

  1. negative
  2. negative
  3. positive

28 papers more in this group

See all 32 papers →

loss of function · molecular: metabolites · Solanum lycopersicum (tomato)Positive and negative results

67 papers: 18 positive, 49 negative or no effect

48 papers in the same direction as this paper · 18 in the opposite direction

  1. positive
  2. positive
  3. positive

63 papers more in this group

See all 67 papers →

loss of function · molecular: expression · Solanum lycopersicum (tomato)Positive and negative results

80 papers: 20 positive, 60 negative or no effect

59 papers in the same direction as this paper · 20 in the opposite direction

  1. positive
  2. positive
  3. positive

76 papers more in this group

See all 80 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.