Paper · 2019 · Phytobiomes Journal

The Effect of Rotating Apple Rootstock Genotypes on Apple Replant Disease and Rhizosphere Microbiome

Greg Deakin; Felicidad Fernández-Fernández; Julie Bennett; et al.

8
claims
16
verbatim quotes
32
citations
5
research areas
✓
Open access

Abstract

Continuous plantation of apple trees (Malus pumila) at the same sites where the same or a closely related species were grown previously leads to poor establishment, reduced growth vigor, and subsequent crop losses; this phenomenon is termed apple replant disease (ARD). Management of ARD is a continual challenge due to (i) restrictions on the use of broad-spectrum soil fumigants, (ii) putative causal agents of ARD can be site-specific, and (iii) more than one causal agent can be present at a site. We conducted an experimental study at two orchard sites to investigate the succession effect of rootstock genotypes on apple tree establishment with three specific objectives: (i) whether ARD in newly planted apple trees is more severe if the same rootstock as the previous one is replanted, (ii) whether trees develop better in the aisle than in original tree stations, and (iii) the extent of association of rootstock genotypes with rhizosphere microbiome in relation to ARD. Tree growth and rhizosphere microbiome were assessed within 30 months of replanting. In one orchard, replanting trees with a rootstock genotype different from the previous one can be effective in reducing ARD development, susceptibility to ARD is likely to be genetically controlled, and replanting trees in the previous grass aisle can reduce ARD development. However, the opposite results were obtained in the other orchard, possibly due to the lack of weed management in the grass aisle affecting tree establishment in the grass aisle. Rhizosphere microbiota associated with specific rootstock genotypes reached a stable state within 7 months of replanting. An arbuscular mycorrhizal fungi operational taxonomic unit (OTU) had reduced abundance with ARD trees; however many other OTUs associated with ARD cannot be identified to low taxonomic ranks and hence their roles cannot be easily interpreted. In conclusion, replanting trees with rootstocks that are genetically differently from the previous one can reduce ARD development. However, in adopting this strategy, the extent of genetic relationships among rootstock genotypes needs to be considered.

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Claims 8

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

At one orchard, changing rootstock genotype reduced apple replant disease.

Treatment
rootstock genotype different from the previous onee0
Outcome
ARD developmente0
Direction
reducinge0
Comparator
previous onee0
Setting
one orcharde0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“In one orchard, replanting trees with a rootstock genotype different from the previous one can be effective in reducing ARD development, susceptibility to ARD is likely to be genetically controlled, and replanting trees in the previous grass aisle can reduce ARD development.”

✓ located verbatim in the source · abstract, characters 1065–1340 · show in text ↑
t0

“Rotating Apple Rootstock”

✓ located verbatim in the source · title, characters 14–38 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

At one orchard, planting in the former grass aisle reduced apple replant disease.

Treatment
replanting trees in the previous grass aislee0
Outcome
ARD developmente0
Direction
reducee0
Setting
one orcharde0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“In one orchard, replanting trees with a rootstock genotype different from the previous one can be effective in reducing ARD development, susceptibility to ARD is likely to be genetically controlled, and replanting trees in the previous grass aisle can reduce ARD development.”

✓ located verbatim in the source · abstract, characters 1065–1340 · show in text ↑
t0

“Rotating Apple Rootstock”

✓ located verbatim in the source · title, characters 14–38 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Authors infer genetic control of apple replant disease susceptibility.

Material
rootstock genotypee0
Outcome
susceptibility to ARDe0
Qualifier
likely to be genetically controllede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“In one orchard, replanting trees with a rootstock genotype different from the previous one can be effective in reducing ARD development, susceptibility to ARD is likely to be genetically controlled, and replanting trees in the previous grass aisle can reduce ARD development.”

✓ located verbatim in the source · abstract, characters 1065–1340 · show in text ↑
t0

“Rotating Apple Rootstock”

✓ located verbatim in the source · title, characters 14–38 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The second orchard showed opposite results, possibly linked to missing weed management in the aisle.

Outcome
opposite resultse0
Qualifier
possibly due to the lack of weed management in the grass aisle affecting tree establishment in the grass aislee0
Setting
other orcharde0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“However, the opposite results were obtained in the other orchard, possibly due to the lack of weed management in the grass aisle affecting tree establishment in the grass aisle.”

✓ located verbatim in the source · abstract, characters 1341–1518 · show in text ↑
t0

“Rotating Apple Rootstock”

✓ located verbatim in the source · title, characters 14–38 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Rootstock-associated rhizosphere microbiota stabilized within seven months.

Material
rootstock genotypese0
Interactor
Rhizosphere microbiotae0other
Outcome
Rhizosphere microbiota associated with specific rootstock genotypes reached a stable statee0
Value
7 monthse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Rhizosphere microbiota associated with specific rootstock genotypes reached a stable state within 7 months of replanting.”

✓ located verbatim in the source · abstract, characters 1519–1640 · show in text ↑
t0

“Rotating Apple Rootstock”

✓ located verbatim in the source · title, characters 14–38 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

An arbuscular mycorrhizal fungal OTU was less abundant in diseased trees.

Interactor
arbuscular mycorrhizal fungie0symbiont
Outcome
arbuscular mycorrhizal fungi operational taxonomic unit (OTU) had reduced abundancee0
Direction
reducede0
Comparator
ARD treese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“An arbuscular mycorrhizal fungi operational taxonomic unit (OTU) had reduced abundance with ARD trees; however many other OTUs associated with ARD cannot be identified to low taxonomic ranks and hence their roles cannot be easily interpreted.”

✓ located verbatim in the source · abstract, characters 1641–1883 · show in text ↑
t0

“Rotating Apple Rootstock”

✓ located verbatim in the source · title, characters 14–38 · show in text ↑
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Many ARD-associated OTUs could not be assigned to low taxonomic ranks.

Outcome
many other OTUs associated with ARD cannot be identified to low taxonomic rankse0
Qualifier
their roles cannot be easily interpretede0

Not reportedComparatorValue

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“An arbuscular mycorrhizal fungi operational taxonomic unit (OTU) had reduced abundance with ARD trees; however many other OTUs associated with ARD cannot be identified to low taxonomic ranks and hence their roles cannot be easily interpreted.”

✓ located verbatim in the source · abstract, characters 1641–1883 · show in text ↑
t0

“Rotating Apple Rootstock”

✓ located verbatim in the source · title, characters 14–38 · show in text ↑
Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors recommend considering genetic relationships between rootstocks when rotating them.

Outcome
the extent of genetic relationships among rootstock genotypes needs to be considerede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“However, in adopting this strategy, the extent of genetic relationships among rootstock genotypes needs to be considered.”

✓ located verbatim in the source · abstract, characters 2015–2136 · show in text ↑
t0

“Rotating Apple Rootstock”

✓ located verbatim in the source · title, characters 14–38 · show in text ↑

grafting · growth · Malus domestica (apple)Positive and negative results

41 papers: 24 positive, 17 negative or no effect

23 papers in the same direction as this paper · 17 in the opposite direction

  1. negative
  2. no effect
  3. negative

37 papers more in this group

See all 41 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.