Paper · 2019 · Eurasian Soil Science

The Structure of Bacterial and Fungal Communities in the Rhizosphere and Root-Free Loci of Gray Forest Soil

M. V. Semenov; D. A. Nikitin; A. L. Stepanov; et al.

9
claims
19
verbatim quotes
34
citations
2
research areas
—
Not open access

Abstract

Abstract The taxonomic composition, abundance, and diversity of bacterial and fungal communities in the rhizosphere loci and bulk mass of the gray forest soil (Eutric Retisol (Loamic, Aric, Cutanic, Humic)) under potatoes, maize, and white mustard grown with the application of mineral and organic fertilizers were compared. Among bacteria, Bacillus megaterium and Paenibacillus polymyxa species predominated in all the experimental variants. The micromycete community was represented by 39 species belonging to 19 genera. Under the impact of organic fertilizers, the abundance of Trichoderma harzianum—an antagonist of many phytopathogens—increased. A decrease in the abundance of representatives of Fusarium genus was observed both in the rhizosphere and in the bulk soil. Fertilization was the most significant factor determining the structure and diversity of micromycete communities both in the soil and rhizosphere. The application of mineral fertilizers reduced the diversity of micromycetes in soil, whereas the use of organic fertilizers increased it. In general, organic fertilizers proved to be more favorable for the rhizosphere and bulk soil mycobiomes and for the total soil suppressiveness than the mineral fertilizers.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 9

Observationobservedoriginal resultmeasured

Claim · model-written summary

Bacillus megaterium and Paenibacillus polymyxa predominated among bacteria in all variants.

Taxon
potatoes, maize, and white mustardSinapis albaSolanum tuberosumZea mayst0
Outcome
Bacillus megaterium and Paenibacillus polymyxa species predominatede0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sinapis alba
Sinapis alba · TaxonAriel Palmon · CC BY-SA 3.0 · Wikimedia Commons ↗
Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗
Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Among bacteria, Bacillus megaterium and Paenibacillus polymyxa species predominated in all the experimental variants.”

✓ located verbatim in the source · abstract, characters 325–442 · show in text ↑
t0

“under potatoes, maize, and white mustard grown”

✓ located verbatim in the source · abstract, characters 207–253 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The micromycete community comprised 39 species in 19 genera.

Taxon
potatoes, maize, and white mustardSinapis albaSolanum tuberosumZea mayst0
Outcome
micromycete communitye0
Value
39 speciese0
Qualifier
19 generae0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sinapis alba
Sinapis alba · TaxonAriel Palmon · CC BY-SA 3.0 · Wikimedia Commons ↗
Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗
Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The micromycete community was represented by 39 species belonging to 19 genera.”

✓ located verbatim in the source · abstract, characters 443–522 · show in text ↑
t0

“under potatoes, maize, and white mustard grown”

✓ located verbatim in the source · abstract, characters 207–253 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Organic fertilizer increased Trichoderma harzianum abundance.

Taxon
potatoes, maize, and white mustardSinapis albaSolanum tuberosumZea mayst0
Treatment
organic fertilizerse0
Interactor
Trichoderma harzianumTrichoderma harzianume0biocontrol_agent
Outcome
abundance of Trichoderma harzianume0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sinapis alba
Sinapis alba · TaxonAriel Palmon · CC BY-SA 3.0 · Wikimedia Commons ↗
Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗
Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗
Trichoderma harzianum
Trichoderma harzianum · InteractorUS Department of Agriculture, Agricultural Research Service, Systematic Botany and Mycology Laboratory, [1] · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Under the impact of organic fertilizers, the abundance of Trichoderma harzianum—an antagonist of many phytopathogens—increased.”

✓ located verbatim in the source · abstract, characters 523–650 · show in text ↑
t0

“under potatoes, maize, and white mustard grown”

✓ located verbatim in the source · abstract, characters 207–253 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Fusarium abundance decreased in the rhizosphere and bulk soil.

Taxon
potatoes, maize, and white mustardSinapis albaSolanum tuberosumZea mayst0
Interactor
FusariumFusariume0pathogen
Outcome
abundance of representatives of Fusarium genuse0
Direction
decreasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sinapis alba
Sinapis alba · TaxonAriel Palmon · CC BY-SA 3.0 · Wikimedia Commons ↗
Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗
Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗
Fusarium
Fusarium · Interactor · picture of the genus (one of its species)Public domain · Wikimedia Commons ↗

Verbatim

e0

“A decrease in the abundance of representatives of Fusarium genus was observed both in the rhizosphere and in the bulk soil.”

✓ located verbatim in the source · abstract, characters 651–774 · show in text ↑
t0

“under potatoes, maize, and white mustard grown”

✓ located verbatim in the source · abstract, characters 207–253 · show in text ↑
Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Fertilization was the most significant factor determining micromycete structure and diversity.

Taxon
potatoes, maize, and white mustardSinapis albaSolanum tuberosumZea mayst0
Treatment
Fertilizatione0
Outcome
structure and diversity of micromycete communitiese0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sinapis alba
Sinapis alba · TaxonAriel Palmon · CC BY-SA 3.0 · Wikimedia Commons ↗
Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗
Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Fertilization was the most significant factor determining the structure and diversity of micromycete communities both in the soil and rhizosphere.”

✓ located verbatim in the source · abstract, characters 775–921 · show in text ↑
t0

“under potatoes, maize, and white mustard grown”

✓ located verbatim in the source · abstract, characters 207–253 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Mineral fertilizer reduced soil micromycete diversity.

Taxon
potatoes, maize, and white mustardSinapis albaSolanum tuberosumZea mayst0
Treatment
mineral fertilizerse0
Outcome
diversity of micromycetes in soile0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sinapis alba
Sinapis alba · TaxonAriel Palmon · CC BY-SA 3.0 · Wikimedia Commons ↗
Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗
Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The application of mineral fertilizers reduced the diversity of micromycetes in soil”

✓ located verbatim in the source · abstract, characters 922–1006 · show in text ↑
t0

“under potatoes, maize, and white mustard grown”

✓ located verbatim in the source · abstract, characters 207–253 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Organic fertilizer increased soil micromycete diversity.

Taxon
potatoes, maize, and white mustardSinapis albaSolanum tuberosumZea mayst0
Treatment
organic fertilizerse0
Outcome
diversity of micromycetes in soile1
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sinapis alba
Sinapis alba · TaxonAriel Palmon · CC BY-SA 3.0 · Wikimedia Commons ↗
Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗
Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the use of organic fertilizers increased it”

✓ located verbatim in the source · abstract, characters 1016–1059 · show in text ↑
e1

“The application of mineral fertilizers reduced the diversity of micromycetes in soil”

✓ located verbatim in the source · abstract, characters 922–1006 · show in text ↑
t0

“under potatoes, maize, and white mustard grown”

✓ located verbatim in the source · abstract, characters 207–253 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Organic fertilizer favored soil and rhizosphere mycobiomes more than mineral fertilizer.

Taxon
potatoes, maize, and white mustardSinapis albaSolanum tuberosumZea mayst0
Treatment
organic fertilizerse0
Outcome
rhizosphere and bulk soil mycobiomese0
Direction
more favorablee0
Comparator
mineral fertilizerse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sinapis alba
Sinapis alba · TaxonAriel Palmon · CC BY-SA 3.0 · Wikimedia Commons ↗
Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗
Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“organic fertilizers proved to be more favorable for the rhizosphere and bulk soil mycobiomes and for the total soil suppressiveness than the mineral fertilizers.”

✓ located verbatim in the source · abstract, characters 1073–1234 · show in text ↑
t0

“under potatoes, maize, and white mustard grown”

✓ located verbatim in the source · abstract, characters 207–253 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Organic fertilizer favored total soil suppressiveness more than mineral fertilizer.

Taxon
potatoes, maize, and white mustardSinapis albaSolanum tuberosumZea mayst0
Treatment
organic fertilizerse0
Outcome
total soil suppressivenesse0
Direction
more favorablee0
Comparator
mineral fertilizerse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sinapis alba
Sinapis alba · TaxonAriel Palmon · CC BY-SA 3.0 · Wikimedia Commons ↗
Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗
Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“organic fertilizers proved to be more favorable for the rhizosphere and bulk soil mycobiomes and for the total soil suppressiveness than the mineral fertilizers.”

✓ located verbatim in the source · abstract, characters 1073–1234 · show in text ↑
t0

“under potatoes, maize, and white mustard grown”

✓ located verbatim in the source · abstract, characters 207–253 · show in text ↑

fertilization · ecology: diversity · Solanum tuberosum (potato)Positive and negative results

3 papers: 2 positive, 1 negative or no effect

1 paper in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
See all 3 papers →

fertilization · ecology: diversity · Zea mays (maize)Positive and negative results

8 papers: 4 positive, 4 negative or no effect

3 papers in the same direction as this paper · 4 in the opposite direction

  1. no effect
  2. no effect
  3. no effect

4 papers more in this group

See all 8 papers →

fertilization · Trichoderma harzianum · Zea mays (maize)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

fertilization · Trichoderma harzianum · Solanum tuberosum (potato)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.