Paper · 2018 · Physiologia Plantarum

Transcriptomic analysis reveals the possible roles of sugar metabolism and export for positive mycorrhizal growth responses in soybean

Shaopeng Zhao; A. Chen; Chengjie Chen; et al.

13
claims
30
verbatim quotes
44
citations
3
research areas
—
Not open access

Abstract

To elucidate molecular mechanisms controlling differential growth responses to root colonization by arbuscular mycorrhizal (AM) fungi varying in colonization and cooperative behavior, a pot experiment was carried out using two soybean genotypes and three AM inocula. The results showed that inoculation by cooperative Rhizophagus irregularis (Ri) or less cooperative Glomus aggregatum with high AM colonization (Ga-H) significantly promoted plant growth compared with inoculation by G. aggregatum with low AM colonization (Ga-L). A comparative RNA sequencing analysis of the root transcriptomes showed that fatty acid synthesis pathway was significantly enriched in all three AM inoculation roots. However, sugar metabolism and transport were significantly enriched only in Ri and Ga-H inoculation, which was consistent with positive growth responses in these two inoculation treatments. Accordingly, the expression levels of the key genes related to sugar metabolism and transport were also upregulated in Ri and Ga-H roots compared with Ga-L roots. Of them, two sugars will eventually be exported transporters (SWEET) transporter genes, GmSWEET6 (Glyma.04G198600) and GmSWEET15 (Glyma.06G166800), and one invertase (Glyma.17G227900) gene were exclusively induced only in Ri and Ga-H roots. Promoter analyses in transgenic soybean roots further demonstrated that GUS driven by the GmSWEET6 promoter was highly expressed in arbuscule-containing cortical cells. Additionally, Ri and Ga-H inoculation increased the contents of sucrose, glucose and fructose in both shoots and roots compared with those of Ga-L and non-mycorrhizal. These results imply that positive mycorrhizal growth responses in plants might mostly be due to the stimulation of photosynthate metabolism and transport by AM fungal inoculum with high colonization capabilities.

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Claims 13

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Inoculation with Rhizophagus irregularis promoted soybean growth compared with inoculation with low-colonising Glomus aggregatum.

Taxon
soybeanGlycine maxt0
Treatment
inoculation by cooperative Rhizophagus irregularis (Ri)e1
Interactor
Rhizophagus irregularisRhizophagus irregularise1symbiont
Outcome
plant growthe1
Direction
promotede1
Comparator
inoculation by G. aggregatum with low AM colonization (Ga-L)e1
Setting
pot experimente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Rhizophagus irregularis
Rhizophagus irregularis · InteractorMylène Durant · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“positive mycorrhizal growth responses in soybean”

✓ located verbatim in the source · title, characters 86–134 · show in text ↑
e0

“a pot experiment was carried out using two soybean genotypes and three AM inocula”

✓ located verbatim in the source · abstract, characters 184–265 · show in text ↑
e1

“inoculation by cooperative Rhizophagus irregularis (Ri) or less cooperative Glomus aggregatum with high AM colonization (Ga-H) significantly promoted plant growth compared with inoculation by G. aggregatum with low AM colonization (Ga-L)”

✓ located verbatim in the source · abstract, characters 291–528 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Inoculation with high-colonising Glomus aggregatum promoted soybean growth compared with low-colonising G. aggregatum.

Taxon
soybeanGlycine maxt0
Treatment
Glomus aggregatum with high AM colonization (Ga-H)e1
Interactor
Glomus aggregatumRhizophagus aggregatuse1symbiont
Outcome
plant growthe1
Direction
promotede1
Comparator
G. aggregatum with low AM colonization (Ga-L)e1
Setting
pot experimente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“positive mycorrhizal growth responses in soybean”

✓ located verbatim in the source · title, characters 86–134 · show in text ↑
e0

“a pot experiment was carried out using two soybean genotypes and three AM inocula”

✓ located verbatim in the source · abstract, characters 184–265 · show in text ↑
e1

“inoculation by cooperative Rhizophagus irregularis (Ri) or less cooperative Glomus aggregatum with high AM colonization (Ga-H) significantly promoted plant growth compared with inoculation by G. aggregatum with low AM colonization (Ga-L)”

✓ located verbatim in the source · abstract, characters 291–528 · show in text ↑
Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Fatty acid synthesis pathway was significantly enriched in roots under all three AM inoculations.

Taxon
soybeanGlycine maxt0
Treatment
AM inoculatione3
Outcome
fatty acid synthesis pathwaye3
Direction
enrichede3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“positive mycorrhizal growth responses in soybean”

✓ located verbatim in the source · title, characters 86–134 · show in text ↑
e3

“fatty acid synthesis pathway was significantly enriched in all three AM inoculation roots”

✓ located verbatim in the source · abstract, characters 607–696 · show in text ↑
Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Sugar metabolism and transport were significantly enriched in roots inoculated with Rhizophagus irregularis.

Taxon
soybeanGlycine maxt0
Treatment
Rie2
Interactor
Rhizophagus irregularisRhizophagus irregularise1symbiont
Outcome
sugar metabolism and transporte2
Direction
enrichede2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Rhizophagus irregularis
Rhizophagus irregularis · InteractorMylène Durant · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“positive mycorrhizal growth responses in soybean”

✓ located verbatim in the source · title, characters 86–134 · show in text ↑
e1

“inoculation by cooperative Rhizophagus irregularis (Ri) or less cooperative Glomus aggregatum with high AM colonization (Ga-H) significantly promoted plant growth compared with inoculation by G. aggregatum with low AM colonization (Ga-L)”

✓ located verbatim in the source · abstract, characters 291–528 · show in text ↑
e2

“sugar metabolism and transport were significantly enriched only in Ri and Ga-H inoculation”

✓ located verbatim in the source · abstract, characters 707–797 · show in text ↑
Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Sugar metabolism and transport were significantly enriched in roots inoculated with high-colonising Glomus aggregatum.

Taxon
soybeanGlycine maxt0
Treatment
Ga-He2
Interactor
Glomus aggregatumRhizophagus aggregatuse1symbiont
Outcome
sugar metabolism and transporte2
Direction
enrichede2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“positive mycorrhizal growth responses in soybean”

✓ located verbatim in the source · title, characters 86–134 · show in text ↑
e1

“inoculation by cooperative Rhizophagus irregularis (Ri) or less cooperative Glomus aggregatum with high AM colonization (Ga-H) significantly promoted plant growth compared with inoculation by G. aggregatum with low AM colonization (Ga-L)”

✓ located verbatim in the source · abstract, characters 291–528 · show in text ↑
e2

“sugar metabolism and transport were significantly enriched only in Ri and Ga-H inoculation”

✓ located verbatim in the source · abstract, characters 707–797 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

SWEET transporter genes GmSWEET6 and GmSWEET15 and one invertase gene were induced exclusively in roots inoculated with Rhizophagus irregularis.

Taxon
soybeanGlycine maxt0
Treatment
Rie5
Gene
GmSWEET6 (Glyma.04G198600) and GmSWEET15 (Glyma.06G166800), and one invertase (Glyma.17G227900) genee5
Outcome
transporter genese5
Direction
inducede5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“positive mycorrhizal growth responses in soybean”

✓ located verbatim in the source · title, characters 86–134 · show in text ↑
e5

“transporter genes, GmSWEET6 (Glyma.04G198600) and GmSWEET15 (Glyma.06G166800), and one invertase (Glyma.17G227900) gene were exclusively induced only in Ri and Ga-H roots”

✓ located verbatim in the source · abstract, characters 1120–1290 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

SWEET transporter genes GmSWEET6 and GmSWEET15 and one invertase gene were induced exclusively in roots inoculated with high-colonising Glomus aggregatum.

Taxon
soybeanGlycine maxt0
Treatment
Ga-He5
Gene
GmSWEET6 (Glyma.04G198600) and GmSWEET15 (Glyma.06G166800), and one invertase (Glyma.17G227900) genee5
Outcome
transporter genese5
Direction
inducede5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“positive mycorrhizal growth responses in soybean”

✓ located verbatim in the source · title, characters 86–134 · show in text ↑
e5

“transporter genes, GmSWEET6 (Glyma.04G198600) and GmSWEET15 (Glyma.06G166800), and one invertase (Glyma.17G227900) gene were exclusively induced only in Ri and Ga-H roots”

✓ located verbatim in the source · abstract, characters 1120–1290 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Expression of key sugar metabolism and transport genes was upregulated in Rhizophagus irregularis roots compared with low-colonising Glomus aggregatum roots.

Taxon
soybeanGlycine maxt0
Treatment
Rie4
Outcome
expression levels of the key genes related to sugar metabolism and transporte4
Direction
upregulatede4
Comparator
Ga-L rootse4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“positive mycorrhizal growth responses in soybean”

✓ located verbatim in the source · title, characters 86–134 · show in text ↑
e4

“the expression levels of the key genes related to sugar metabolism and transport were also upregulated in Ri and Ga-H roots compared with Ga-L roots”

✓ located verbatim in the source · abstract, characters 901–1049 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Expression of key sugar metabolism and transport genes was upregulated in high-colonising Glomus aggregatum roots compared with low-colonising Glomus aggregatum roots.

Taxon
soybeanGlycine maxt0
Treatment
Ga-He4
Outcome
expression levels of the key genes related to sugar metabolism and transporte4
Direction
upregulatede4
Comparator
Ga-L rootse4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“positive mycorrhizal growth responses in soybean”

✓ located verbatim in the source · title, characters 86–134 · show in text ↑
e4

“the expression levels of the key genes related to sugar metabolism and transport were also upregulated in Ri and Ga-H roots compared with Ga-L roots”

✓ located verbatim in the source · abstract, characters 901–1049 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The GmSWEET6 promoter drove GUS expression that was highly expressed in arbuscule-containing cortical cells of transgenic soybean roots.

Taxon
soybeanGlycine maxt0
Material
transgenic soybean rootse7
Organ / stage
arbuscule-containing cortical cellse7
Gene
GmSWEET6e7
Outcome
GUSe7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“positive mycorrhizal growth responses in soybean”

✓ located verbatim in the source · title, characters 86–134 · show in text ↑
e7

“Promoter analyses in transgenic soybean roots further demonstrated that GUS driven by the GmSWEET6 promoter was highly expressed in arbuscule-containing cortical cells”

✓ located verbatim in the source · abstract, characters 1292–1459 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Rhizophagus irregularis inoculation increased sucrose, glucose and fructose contents in shoots and roots compared with low-colonising Glomus aggregatum and non-mycorrhizal plants.

Taxon
soybeanGlycine maxt0
Organ / stage
shoots and rootse6
Treatment
Rie6
Outcome
contents of sucrose, glucose and fructosee6
Direction
increasede6
Comparator
Ga-L and non-mycorrhizale6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“positive mycorrhizal growth responses in soybean”

✓ located verbatim in the source · title, characters 86–134 · show in text ↑
e6

“Ri and Ga-H inoculation increased the contents of sucrose, glucose and fructose in both shoots and roots compared with those of Ga-L and non-mycorrhizal”

✓ located verbatim in the source · abstract, characters 1475–1627 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

High-colonising Glomus aggregatum inoculation increased sucrose, glucose and fructose contents in shoots and roots compared with low-colonising G. aggregatum and non-mycorrhizal plants.

Taxon
soybeanGlycine maxt0
Organ / stage
shoots and rootse6
Treatment
Ga-He6
Outcome
contents of sucrose, glucose and fructosee6
Direction
increasede6
Comparator
Ga-L and non-mycorrhizale6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“positive mycorrhizal growth responses in soybean”

✓ located verbatim in the source · title, characters 86–134 · show in text ↑
e6

“Ri and Ga-H inoculation increased the contents of sucrose, glucose and fructose in both shoots and roots compared with those of Ga-L and non-mycorrhizal”

✓ located verbatim in the source · abstract, characters 1475–1627 · show in text ↑
Mechanismhypothesisoriginal resultbasis n/a

Claim · model-written summary

Positive mycorrhizal growth responses in soybean might mostly be due to stimulated photosynthate metabolism and transport by AM fungal inoculum with high colonisation capacity.

Taxon
soybeanGlycine maxt0
Outcome
positive mycorrhizal growth responsese7
Qualifier
stimulation of photosynthate metabolism and transporte7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“positive mycorrhizal growth responses in soybean”

✓ located verbatim in the source · title, characters 86–134 · show in text ↑
e7

“positive mycorrhizal growth responses in plants might mostly be due to the stimulation of photosynthate metabolism and transport by AM fungal inoculum with high colonization capabilities”

✓ located verbatim in the source · abstract, characters 1654–1840 · show in text ↑

Rhizophagus irregularis · growth · Glycine max (soybean)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

infection · growth · Glycine max (soybean)Positive and negative results

36 papers: 9 positive, 27 negative or no effect

8 papers in the same direction as this paper · 27 in the opposite direction

  1. positive
  2. negative
  3. negative

32 papers more in this group

See all 36 papers →

mycorrhiza · growth · Glycine max (soybean)Positive and negative results

87 papers: 79 positive, 8 negative or no effect

78 papers in the same direction as this paper · 7 in the opposite direction · 1 reporting no difference from an alternative

  1. positive
  2. no effect
  3. negative

83 papers more in this group

See all 87 papers →

inoculation · growth · Glycine max (soybean)Positive and negative results

358 papers: 323 positive, 35 negative or no effect

322 papers in the same direction as this paper · 33 in the opposite direction · 2 reporting no difference from an alternative

  1. positive
  2. negative
  3. negative

354 papers more in this group

See all 358 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.