Paper · 1994 · Purdue e-Pubs (Purdue University System)

Modulation of plant gene expression using antisense technology and gene amplification: Alteration of shikimate pathway gene expression

James Dale Jones

14
claims
29
verbatim quotes
0
citations
3
research areas
—
Not open access

Abstract

The effect of genetic alterations on carbon flow through the shikimate pathway, using gene amplification or antisense RNA expression, was examined. Transgenic potato plants containing a chimeric 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (DAHPS) antisense gene were produced to examine the role(s) of DAHPS in plant development. Wound-induced DAHPS gene expression (enzyme activity, protein, and mRNA) was reduced in wounded tuber tissue of three independent transgenic plants expressing DAHPS antisense RNA. DAHPS mRNA levels were reduced in shoot tips and/or stem tissue of five antisense plants. These plants had reduced stem diameter and/or stem lignification compared to untransformed plants. These alterations may in part be due to reduced carbon flow through the shikimate pathway. Gene amplification allows an organism to increase the expression of a gene(s), particularly in response to environmental stress. The stability and expression of amplified 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) genes was examined in glyphosate resistant tobacco cells and regenerated plantlets. Resistant cells grown without glyphosate for over 3 years stably maintained high levels of EPSPS gene amplification; however, resistance to glyphosate declined 7-fold compared to cells continously grown on glyphosate. Similarly, plantlets regenerated from resistant cells retained levels of EPSPS gene amplification comparable to that in resistant cells, but resistance to glyphosate was greatly reduced. EPSPS mRNA levels in plantlets were reduced relative to those in resistant cells. Regenerated plantlets were altered morphologically; this was correlated with an increased genome size. The potential of utilizing gene amplification to increase the expression of nonselectable genes was examined. A transgenic petunia cell culture containing neomycin phosphotransferase II (npt II) and $\beta$-glucuronidase (GUS) genes was used in selection experiments to obtain kanamycin resistant cell lines. Resistance was correlated with npt II gene amplification and increased npt II mRNA levels. There was also a concurrent co-amplification of the linked GUS gene, resulting in increased GUS mRNA levels and enzyme activity. Amplified genes were stably maintained and GUS enzyme activity stably overexpressed in the absence of selective pressure. Amplification was found to occur within eleven growth cycles. In one cell line, gene amplification was accompanied by DNA rearrangement.

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Claims 14

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

DAHPS antisense reduced wound-induced expression in potato tuber tissue.

Organ / stage
wounded tuber tissuee0
Treatment
DAHPS antisense RNAe0
Gene
DAHPSe0
Outcome
DAHPS gene expressione0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Wound-induced DAHPS gene expression (enzyme activity, protein, and mRNA) was reduced in wounded tuber tissue of three independent transgenic plants expressing DAHPS antisense RNA.”

✓ located verbatim in the source · abstract, characters 339–518 · show in text ↑
t0

“potato”

✓ located verbatim in the source · abstract, characters 159–165 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

DAHPS mRNA was reduced in shoot tips and/or stems of five antisense potato plants.

Organ / stage
shoot tips and/or stem tissuee0
Gene
DAHPSe0
Outcome
DAHPS mRNA levelse0
Direction
reducede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e0

“DAHPS mRNA levels were reduced in shoot tips and/or stem tissue of five antisense plants.”

✓ located verbatim in the source · abstract, characters 519–608 · show in text ↑
t0

“potato”

✓ located verbatim in the source · abstract, characters 159–165 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Antisense potato plants had reduced stem diameter and/or lignification.

Treatment
antisense plantst1
Outcome
stem diameter and/or stem lignificatione0
Direction
reducede0
Comparator
untransformed plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e0

“These plants had reduced stem diameter and/or stem lignification compared to untransformed plants.”

✓ located verbatim in the source · abstract, characters 609–707 · show in text ↑
t0

“potato”

✓ located verbatim in the source · abstract, characters 159–165 · show in text ↑
t1

“antisense plants”

✓ located verbatim in the source · abstract, characters 591–607 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Tobacco cells retained high EPSPS gene amplification after over three years without glyphosate.

Gene
EPSPSe0
Outcome
EPSPS gene amplificatione0
Direction
highe0
Qualifier
without glyphosate for over 3 yearse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“Resistant cells grown without glyphosate for over 3 years stably maintained high levels of EPSPS gene amplification”

✓ located verbatim in the source · abstract, characters 1106–1221 · show in text ↑
t0

“tobacco”

✓ located verbatim in the source · abstract, characters 1065–1072 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Glyphosate resistance of tobacco cells grown without glyphosate declined sevenfold relative to continuously exposed cells.

Outcome
resistance to glyphosatee0
Direction
declinede0
Value
7-folde0
Comparator
cells continously grown on glyphosatee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“resistance to glyphosate declined 7-fold compared to cells continously grown on glyphosate.”

✓ located verbatim in the source · abstract, characters 1232–1323 · show in text ↑
t0

“tobacco”

✓ located verbatim in the source · abstract, characters 1065–1072 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Regenerated tobacco plantlets retained EPSPS amplification comparable to resistant cells.

Gene
EPSPSe0
Outcome
EPSPS gene amplificatione0
Comparator
resistant cellse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“plantlets regenerated from resistant cells retained levels of EPSPS gene amplification comparable to that in resistant cells”

✓ located verbatim in the source · abstract, characters 1335–1459 · show in text ↑
t0

“tobacco”

✓ located verbatim in the source · abstract, characters 1065–1072 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Regenerated tobacco plantlets had greatly reduced glyphosate resistance.

Outcome
resistance to glyphosatee0
Direction
greatly reducede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“resistance to glyphosate was greatly reduced.”

✓ located verbatim in the source · abstract, characters 1465–1510 · show in text ↑
t0

“tobacco”

✓ located verbatim in the source · abstract, characters 1065–1072 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

EPSPS mRNA was lower in regenerated tobacco plantlets than resistant cells.

Gene
EPSPSe0
Outcome
EPSPS mRNA levelse0
Direction
reducede0
Comparator
resistant cellse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“EPSPS mRNA levels in plantlets were reduced relative to those in resistant cells.”

✓ located verbatim in the source · abstract, characters 1511–1592 · show in text ↑
t0

“tobacco”

✓ located verbatim in the source · abstract, characters 1065–1072 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Regenerated tobacco plantlets had altered morphology correlated with increased genome size.

Gene
genome sizee0
Outcome
altered morphologicallye0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“Regenerated plantlets were altered morphologically; this was correlated with an increased genome size.”

✓ located verbatim in the source · abstract, characters 1593–1695 · show in text ↑
t0

“tobacco”

✓ located verbatim in the source · abstract, characters 1065–1072 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Kanamycin resistance in petunia cells correlated with npt II amplification and increased npt II mRNA.

Taxon
petuniaPetuniat0
Gene
npt IIe0
Outcome
Resistancee0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Petunia
Petunia · Taxon · picture from its Wikimedia Commons categorySalwa Farwaneh Dameh · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Resistance was correlated with npt II gene amplification and increased npt II mRNA levels.”

✓ located verbatim in the source · abstract, characters 2005–2095 · show in text ↑
t0

“petunia”

✓ located verbatim in the source · abstract, characters 1819–1826 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Linked GUS co-amplification increased GUS mRNA and enzyme activity in petunia cells.

Taxon
petuniaPetuniat0
Gene
GUSe0
Outcome
GUS mRNA levels and enzyme activitye0
Direction
increasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Petunia
Petunia · Taxon · picture from its Wikimedia Commons categorySalwa Farwaneh Dameh · CC0 · Wikimedia Commons ↗

Verbatim

e0

“There was also a concurrent co-amplification of the linked GUS gene, resulting in increased GUS mRNA levels and enzyme activity.”

✓ located verbatim in the source · abstract, characters 2096–2224 · show in text ↑
t0

“petunia”

✓ located verbatim in the source · abstract, characters 1819–1826 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Amplified genes and GUS overexpression persisted without selection in petunia cells.

Taxon
petuniaPetuniat0
Gene
GUSe0
Outcome
GUS enzyme activitye0
Direction
overexpressede0
Qualifier
absence of selective pressuree0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Petunia
Petunia · Taxon · picture from its Wikimedia Commons categorySalwa Farwaneh Dameh · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Amplified genes were stably maintained and GUS enzyme activity stably overexpressed in the absence of selective pressure.”

✓ located verbatim in the source · abstract, characters 2225–2346 · show in text ↑
t0

“petunia”

✓ located verbatim in the source · abstract, characters 1819–1826 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Gene amplification occurred within eleven growth cycles in petunia cells.

Taxon
petuniaPetuniat0
Outcome
Amplificatione0
Value
eleven growth cyclese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Petunia
Petunia · Taxon · picture from its Wikimedia Commons categorySalwa Farwaneh Dameh · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Amplification was found to occur within eleven growth cycles.”

✓ located verbatim in the source · abstract, characters 2347–2408 · show in text ↑
t0

“petunia”

✓ located verbatim in the source · abstract, characters 1819–1826 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

One petunia cell line showed DNA rearrangement with amplification.

Taxon
petuniaPetuniat0
Outcome
DNA rearrangemente0
Qualifier
one cell linee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Petunia
Petunia · Taxon · picture from its Wikimedia Commons categorySalwa Farwaneh Dameh · CC0 · Wikimedia Commons ↗

Verbatim

e0

“In one cell line, gene amplification was accompanied by DNA rearrangement.”

✓ located verbatim in the source · abstract, characters 2409–2483 · show in text ↑
t0

“petunia”

✓ located verbatim in the source · abstract, characters 1819–1826 · show in text ↑

7-phospho-2-dehydro-3-deoxy-D-arabino-heptonic acid · molecular: expression · Solanum tuberosum (potato)Results agree

2 papers: 0 positive, 2 negative or no effect

1 paper in the same direction as this paper

  1. negative
See all 2 papers →

loss of function · molecular: expression · Solanum tuberosum (potato)Positive and negative results

17 papers: 6 positive, 11 negative or no effect

10 papers in the same direction as this paper · 6 in the opposite direction

  1. positive
  2. positive
  3. positive

13 papers more in this group

See all 17 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.