Paper · 2017 · Genes

Comparative Analysis of Soybean Root Proteome Reveals Molecular Basis of Differential Carboxylate Efflux under Low Phosphorus Stress

Krishnapriya Vengavasi; Renu Pandey; Gerard Abraham; et al.

8
claims
17
verbatim quotes
33
citations
2
research areas
✓
Open access · cc-by

Abstract

Carboxylate efflux from roots is a crucial and differential response of soybean genotypes to low phosphorus (P) stress. Exudation of carboxylic acids including oxalate, citrate, succinate and fumarate was induced under low P stress, particularly in P-efficient soybean genotypes. Enhancement of root length, surface area and volume further improved P acquisition under low P stress. To understand the molecular basis of carboxylate efflux under low P stress, the root proteome of contrasting genotypes (P-efficient: EC-232019 and P-inefficient: EC-113396) was compared. Among a total of 325 spots, 105 (32%) were differentially abundant proteins (DAPs) between sufficient (250 µM) and low P (4 µM) levels. Abundance of 44 (14%) proteins decreased by more than two-fold under low P stress, while 61 (19%) proteins increased by more than two-fold. Protein identification and annotation revealed that the DAPs were involved in a myriad of functions including carboxylic acid synthesis, carbohydrate, protein and lipid metabolism. Proteins with significant abundance included malate dehydrogenase, isocitrate dehydrogenase, phosphoglucomutase, phosphoglycerate mutase, fructokinase, enolase, phosphoglycerate kinase, triosephosphate isomerase, alcohol dehydrogenase, glucan water dikinase, glutamine synthetase and argininosuccinate lyase. Inferences from proteomic analysis suggests the crosstalk between various metabolic pathways implicated in conferring superior P acquisition efficiency under stress.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 8

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Low phosphorus induced root exudation of oxalate, citrate, succinate and fumarate, especially in phosphorus-efficient soybean genotypes.

Taxon
soybeanGlycine maxt0
Material
P-efficient soybean genotypese0
Treatment
low P stresse0
Outcome
Exudation of carboxylic acids including oxalate, citrate, succinate and fumaratee0
Direction
inducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Exudation of carboxylic acids including oxalate, citrate, succinate and fumarate was induced under low P stress, particularly in P-efficient soybean genotypes.”

✓ located verbatim in the source · abstract, characters 120–279 · show in text ↑
t0

“Soybean”

✓ located verbatim in the source · title, characters 24–31 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

Enhanced root length, surface area and volume improved phosphorus acquisition under low phosphorus stress.

Taxon
soybeanGlycine maxt0
Organ / stage
roote0
Outcome
P acquisitione0
Qualifier
Enhancement of root length, surface area and volumee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Enhancement of root length, surface area and volume further improved P acquisition under low P stress.”

✓ located verbatim in the source · abstract, characters 280–382 · show in text ↑
t0

“Soybean”

✓ located verbatim in the source · title, characters 24–31 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Of 325 protein spots, 105 were differentially abundant between sufficient and low phosphorus.

Taxon
SoybeanGlycine maxt0
Organ / stage
Roott0
Treatment
low P (4 µM)e0
Outcome
differentially abundant proteins (DAPs)e0
Value
105 (32%)e0
Comparator
sufficient (250 µM)e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Among a total of 325 spots, 105 (32%) were differentially abundant proteins (DAPs) between sufficient (250 µM) and low P (4 µM) levels.”

✓ located verbatim in the source · abstract, characters 570–705 · show in text ↑
t0

“Soybean Root”

✓ located verbatim in the source · title, characters 24–36 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Under low phosphorus, abundance of 44 proteins decreased more than twofold.

Taxon
SoybeanGlycine maxt0
Treatment
low P stresse0
Outcome
proteinse0
Direction
decreasede0
Value
44 (14%)e0
Qualifier
more than two-folde0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Abundance of 44 (14%) proteins decreased by more than two-fold under low P stress”

✓ located verbatim in the source · abstract, characters 706–787 · show in text ↑
t0

“Soybean”

✓ located verbatim in the source · title, characters 24–31 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Under low phosphorus, abundance of 61 proteins increased more than twofold.

Taxon
SoybeanGlycine maxt0
Treatment
low Pt1
Outcome
proteinst1
Direction
increasede0
Value
61 (19%)e0
Qualifier
more than two-folde0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“while 61 (19%) proteins increased by more than two-fold.”

✓ located verbatim in the source · abstract, characters 789–845 · show in text ↑
t0

“Soybean”

✓ located verbatim in the source · title, characters 24–31 · show in text ↑
t1

“under low P stress, while 61 (19%) proteins increased by more than two-fold.”

✓ located verbatim in the source · abstract, characters 769–845 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Differentially abundant proteins covered carboxylic acid synthesis and carbohydrate, protein and lipid metabolism.

Taxon
SoybeanGlycine maxt0
Outcome
carboxylic acid synthesis, carbohydrate, protein and lipid metabolisme0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Protein identification and annotation revealed that the DAPs were involved in a myriad of functions including carboxylic acid synthesis, carbohydrate, protein and lipid metabolism.”

✓ located verbatim in the source · abstract, characters 846–1026 · show in text ↑
t0

“Soybean”

✓ located verbatim in the source · title, characters 24–31 · show in text ↑
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Proteins with significant abundance included enzymes of carboxylate and central metabolism.

Taxon
SoybeanGlycine maxt0
Gene
malate dehydrogenasee0
Outcome
significant abundancee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Proteins with significant abundance included malate dehydrogenase, isocitrate dehydrogenase, phosphoglucomutase, phosphoglycerate mutase, fructokinase, enolase, phosphoglycerate kinase, triosephosphate isomerase, alcohol dehydrogenase, glucan water dikinase, glutamine synthetase and argininosuccinate lyase.”

✓ located verbatim in the source · abstract, characters 1027–1335 · show in text ↑
t0

“Soybean”

✓ located verbatim in the source · title, characters 24–31 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

Proteomic results suggest crosstalk among metabolic pathways contributing to superior phosphorus acquisition under stress.

Taxon
SoybeanGlycine maxt0
Outcome
P acquisition efficiencye0
Qualifier
crosstalk between various metabolic pathwayse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Inferences from proteomic analysis suggests the crosstalk between various metabolic pathways implicated in conferring superior P acquisition efficiency under stress.”

✓ located verbatim in the source · abstract, characters 1336–1501 · show in text ↑
t0

“Soybean”

✓ located verbatim in the source · title, characters 24–31 · show in text ↑

phosphorus · molecular: metabolites · Glycine max (soybean)Positive and negative results

38 papers: 28 positive, 10 negative or no effect

27 papers in the same direction as this paper · 10 in the opposite direction

  1. negative
  2. no effect
  3. negative

34 papers more in this group

See all 38 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.