Paper · 2004 · Zhōngyāng yánjiūyuàn zhíwùxué huikān/Zhōngyāng yánjiūyuàn zhíwùxué huikān

Purification and characterization of a cytosolic starch phosphorylase from etiolated rice seedlings

Jen‐Hung Hsu; Chien‐Chih Yang; Jong‐Ching Su; et al.

19
claims
38
verbatim quotes
9
citations
2
research areas
—
Not open access

Abstract

Starch phosphorylasel (Pho1) from etiolated rice (Oryza sativa L. cv. Tainong 67) seedlings was purified by ammonium sulfate fractionation, DEAE-Sepharose CL-6B anion exchange chromatography, and dextrin-Sepharose 4B affinity chromatography. The purification fold was 299, and the enzyme activity recovery was about 21%. The molecular mass of the native Pho1 on Superose 12 gel filtration was 145 kDa. The subunit molecular weight as determined by SDS-PAGE was 85 kDa. The enzyme has an optimum pH of 5 and an optimum reaction temperature of about 45℃~50℃. In the synthetic reaction for Glc 1-P, the k(subscript m) value was 2.1 mM, and the V(subscript max) value was 5.85 U mg ^-1. In the phosphorolytic direction for orthophosphate, the k(subscript m) value was 3.8 mM. Phol has a higher affinity for amylopectin, glycogen, soluble starch and dextrin than for maltooligosaccharide (6 to 10 glucose units). In addition, the k (subscript m) value for amylopectin was ninefold lower than for dextrin. Cyclohexaamylose, cycloheptaamylose, cyclooctaamylose, and maltotetrose were inhibitors of Pho1. Mannose 1-P, Fru 6-P, ADPGlc, UDPGlc, AMP, IMP and PEP also inhibit Pho1. The metal ions Ag (superscript +), Hg(superscript 2+), and Zn(superscript 2+) also reduce the enzyme activity. However, thiol reagents activate Phol activity, suggesting that sulfhydryl-group(s) may be required for enzyme stability.

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Claims 19

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Pho1 purification was 299-fold with about 21% activity recovery.

Outcome
purification folde1
Value
299e1

Not reportedGene

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“etiolated rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 34–91 · show in text ↑
e1

“The purification fold was 299, and the enzyme activity recovery was about 21%”

✓ located verbatim in the source · abstract, characters 242–319 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Pho1 enzyme activity recovery was about 21%.

Outcome
enzyme activity recoverye1
Value
about 21%e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“the enzyme activity recovery was about 21%”

✓ located verbatim in the source · abstract, characters 277–319 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Native Pho1 had mass 145 kDa.

Gene
Pho1e1
Outcome
molecular masse1
Value
145 kDae1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“The molecular mass of the native Pho1 on Superose 12 gel filtration was 145 kDa”

✓ located verbatim in the source · abstract, characters 321–400 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Pho1 subunit mass was 85 kDa.

Outcome
subunit molecular weighte1
Value
85 kDae1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“The subunit molecular weight as determined by SDS-PAGE was 85 kDa”

✓ located verbatim in the source · abstract, characters 402–467 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The enzyme optimum pH was 5.

Outcome
optimum pHe1
Value
5e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“The enzyme has an optimum pH of 5”

✓ located verbatim in the source · abstract, characters 469–502 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The enzyme optimum temperature was about 45℃~50℃.

Outcome
optimum reaction temperaturee1
Value
about 45℃~50℃e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“an optimum reaction temperature of about 45℃~50℃”

✓ located verbatim in the source · abstract, characters 507–555 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Synthetic Glc 1-P reaction k(subscript m) was 2.1 mM.

Outcome
k(subscript m) valuee1
Value
2.1 mMe1
Qualifier
synthetic reaction for Glc 1-Pe1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“In the synthetic reaction for Glc 1-P, the k(subscript m) value was 2.1 mM”

✓ located verbatim in the source · abstract, characters 557–631 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Synthetic reaction V(subscript max) was 5.85 U mg ^-1.

Outcome
V(subscript max) valuee1
Value
5.85 U mg ^-1e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“the V(subscript max) value was 5.85 U mg ^-1”

✓ located verbatim in the source · abstract, characters 637–681 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Orthophosphate phosphorolytic k(subscript m) was 3.8 mM.

Outcome
k(subscript m) valuee1
Value
3.8 mMe1
Qualifier
phosphorolytic direction for orthophosphatee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“In the phosphorolytic direction for orthophosphate, the k(subscript m) value was 3.8 mM”

✓ located verbatim in the source · abstract, characters 683–770 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Pho1 affinity was higher for amylopectin, glycogen, soluble starch and dextrin than for maltooligosaccharide.

Gene
Phole1
Outcome
affinitye1
Direction
highere1
Comparator
maltooligosaccharidee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“Phol has a higher affinity for amylopectin, glycogen, soluble starch and dextrin than for maltooligosaccharide (6 to 10 glucose units)”

✓ located verbatim in the source · abstract, characters 772–906 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The amylopectin k value was ninefold lower than dextrin.

Outcome
k (subscript m) valuee1
Direction
lowere1
Value
ninefolde1
Comparator
dextrine1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“the k (subscript m) value for amylopectin was ninefold lower than for dextrin”

✓ located verbatim in the source · abstract, characters 921–998 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Cyclohexaamylose, cycloheptaamylose, and cyclooctaamylose inhibited Pho1.

Treatment
Cyclohexaamylose, cycloheptaamylose, cyclooctaamylosee1
Outcome
Pho1e1

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“Cyclohexaamylose, cycloheptaamylose, cyclooctaamylose, and maltotetrose were inhibitors of Pho1”

✓ located verbatim in the source · abstract, characters 1000–1095 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Maltotetrose inhibited Pho1.

Treatment
maltotetrosee1
Outcome
Pho1e1

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“maltotetrose were inhibitors of Pho1”

✓ located verbatim in the source · abstract, characters 1059–1095 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Mannose 1-P, Fru 6-P, and ADPGlc inhibited Pho1.

Treatment
Mannose 1-P, Fru 6-P, ADPGlce1
Outcome
Pho1e1

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“Mannose 1-P, Fru 6-P, ADPGlc, UDPGlc, AMP, IMP and PEP also inhibit Pho1”

✓ located verbatim in the source · abstract, characters 1097–1169 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

UDPGlc, AMP, and IMP inhibited Pho1.

Treatment
UDPGlc, AMP, IMPe1
Outcome
Pho1e1

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“UDPGlc, AMP, IMP and PEP also inhibit Pho1”

✓ located verbatim in the source · abstract, characters 1127–1169 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

PEP inhibited Pho1.

Treatment
PEPe1
Outcome
Pho1e1

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“PEP also inhibit Pho1”

✓ located verbatim in the source · abstract, characters 1148–1169 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Silver, mercury, and zinc ions reduced enzyme activity.

Treatment
Ag (superscript +), Hg(superscript 2+), and Zn(superscript 2+)e1
Outcome
enzyme activitye1
Direction
reducee1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“The metal ions Ag (superscript +), Hg(superscript 2+), and Zn(superscript 2+) also reduce the enzyme activity”

✓ located verbatim in the source · abstract, characters 1171–1280 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Thiol reagents activated Phol activity.

Treatment
thiol reagentse1
Outcome
Phol activitye1
Direction
activatee1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“thiol reagents activate Phol activity”

✓ located verbatim in the source · abstract, characters 1291–1328 · show in text ↑
Mechanismhypothesisoriginal resultbasis n/a

Claim · model-written summary

Sulfhydryl groups may be required for enzyme stability.

Outcome
enzyme stabilitye1
Qualifier
sulfhydryl-group(s)e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice (Oryza sativa L. cv. Tainong 67) seedlings”

✓ located verbatim in the source · abstract, characters 44–91 · show in text ↑
e1

“suggesting that sulfhydryl-group(s) may be required for enzyme stability”

✓ located verbatim in the source · abstract, characters 1330–1402 · show in text ↑

zinc atom · soil: biology · Oryza sativa (rice)Positive and negative results

12 papers: 10 positive, 2 negative or no effect

1 paper in the same direction as this paper · 10 in the opposite direction

  1. positive
  2. positive
  3. positive

8 papers more in this group

See all 12 papers →

silver atom · soil: biology · Oryza sativa (rice)Results agree

2 papers: 0 positive, 2 negative or no effect

1 paper in the same direction as this paper

  1. negative
See all 2 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.