Paper · 2006 · Functional Plant Biology

EcoMeristem, a model of morphogenesis and competition among sinks in rice. 2. Simulating genotype responses to phosphorus deficiency

Michael Dingkuhn; Delphine Luquet; HaeKoo Kim; et al.

11
claims
22
verbatim quotes
60
citations
2
research areas
—
Not open access

Abstract

Phenotypic plasticity enables plants to adjust their morphology and phenology to variable environments. Although potentially important for crop breeding and management, the physiology and genetics of plasticity traits are poorly understood, and few models exist for their study. In the previous paper of this series, the structural-functional model EcoMeristem was described and field validated for vegetative-stage rice. This study applies the model to an experimental study on phosphorus deficiency effects on two morphologically contrasting rice cultivars, IR64 and Azucena, grown in controlled environments under hydroponics culture. Phosphorus deficiency caused severe biomass growth reductions in the shoot but not in the root, thus increasing the root / shoot weight ratio. It also inhibited tiller formation and leaf elongation, prolonged the phyllochron, and increased carbohydrate reserve pools in the plant. Analysis aided by the model identified inhibition of leaf extension and tillering as primary effects of the stress. Physiological feedback probably led to longer phyllochron, greater reserve accumulation and root growth stimulation. The main effect of P deficiency appeared to be a reduction in demand for assimilates in the shoot while photosynthetic radiation use efficiency remained nearly constant, resulting in spill-over of excess assimilates into reserve compartments and root growth. The results are discussed in the light of future applications of EcoMeristem for phenotyping and genetic analyses of phenotypic plasticity.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 11

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Phosphorus deficiency severely reduced shoot biomass growth.

Organ / stage
shoote0
Treatment
Phosphorus deficiencye0
Outcome
biomass growthe0
Direction
reductionse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Phosphorus deficiency caused severe biomass growth reductions in the shoot but not in the root”

✓ located verbatim in the source · abstract, characters 638–732 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 69–73 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Phosphorus deficiency did not reduce root biomass growth.

Organ / stage
roote0
Treatment
Phosphorus deficiencye0
Outcome
biomass growthe0
Direction
not in the roote0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Phosphorus deficiency caused severe biomass growth reductions in the shoot but not in the root”

✓ located verbatim in the source · abstract, characters 638–732 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 69–73 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Phosphorus deficiency increased the root to shoot weight ratio.

Treatment
phosphorus deficiencyt0
Outcome
root / shoot weight ratioe0
Direction
increasinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“thus increasing the root / shoot weight ratio”

✓ located verbatim in the source · abstract, characters 734–779 · show in text ↑
t0

“rice. 2. Simulating genotype responses to phosphorus deficiency”

✓ located verbatim in the source · title, characters 69–132 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Phosphorus deficiency inhibited tiller formation and leaf elongation.

Treatment
phosphorus deficiencyt0
Outcome
tiller formation and leaf elongatione0
Direction
inhibitede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“It also inhibited tiller formation and leaf elongation”

✓ located verbatim in the source · abstract, characters 781–835 · show in text ↑
t0

“rice. 2. Simulating genotype responses to phosphorus deficiency”

✓ located verbatim in the source · title, characters 69–132 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Phosphorus deficiency prolonged the phyllochron.

Treatment
phosphorus deficiencyt0
Outcome
phyllochrone0
Direction
prolongede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“prolonged the phyllochron”

✓ located verbatim in the source · abstract, characters 837–862 · show in text ↑
t0

“rice. 2. Simulating genotype responses to phosphorus deficiency”

✓ located verbatim in the source · title, characters 69–132 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Phosphorus deficiency increased carbohydrate reserve pools.

Treatment
phosphorus deficiencyt0
Outcome
carbohydrate reserve poolse0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“increased carbohydrate reserve pools in the plant”

✓ located verbatim in the source · abstract, characters 868–917 · show in text ↑
t0

“rice. 2. Simulating genotype responses to phosphorus deficiency”

✓ located verbatim in the source · title, characters 69–132 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Model-aided analysis identified inhibited leaf extension and tillering as primary stress effects.

Outcome
inhibition of leaf extension and tilleringe0
Qualifier
primary effects of the stresse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Analysis aided by the model identified inhibition of leaf extension and tillering as primary effects of the stress”

✓ located verbatim in the source · abstract, characters 919–1033 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 69–73 · show in text ↑
Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

Physiological feedback probably led to longer phyllochron, reserve accumulation and root growth stimulation.

Outcome
longer phyllochron, greater reserve accumulation and root growth stimulatione0
Qualifier
Physiological feedbacke0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Physiological feedback probably led to longer phyllochron, greater reserve accumulation and root growth stimulation”

✓ located verbatim in the source · abstract, characters 1035–1150 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 69–73 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The main P deficiency effect appeared to be reduced shoot assimilate demand.

Treatment
P deficiencye0
Outcome
demand for assimilates in the shoote0
Direction
reductione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“main effect of P deficiency appeared to be a reduction in demand for assimilates in the shoot”

✓ located verbatim in the source · abstract, characters 1156–1249 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 69–73 · show in text ↑
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

Photosynthetic radiation use efficiency remained nearly constant.

Outcome
photosynthetic radiation use efficiencye0
Direction
remained nearly constante0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“photosynthetic radiation use efficiency remained nearly constant”

✓ located verbatim in the source · abstract, characters 1256–1320 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 69–73 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Excess assimilates appeared to spill into reserves and root growth.

Outcome
reserve compartments and root growthe0
Qualifier
spill-over of excess assimilatese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“spill-over of excess assimilates into reserve compartments and root growth”

✓ located verbatim in the source · abstract, characters 1335–1409 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 69–73 · show in text ↑

phosphorus · growth · Oryza sativa (rice)Positive and negative results

166 papers: 133 positive, 33 negative or no effect

132 papers in the same direction as this paper · 32 in the opposite direction · 1 reporting no difference from an alternative

This paper is about lacking the nutrient, so it counts the other way round here.

  1. positive
    Phosphorus deficiency reduced shoot growth relative to root growth.

    Phenotypic Plasticity of Rice Seedlings: Case of Phosphorus Deficiency · 2005

    Same directionCited by this paperAbout lacking this nutrient, so it counts the other way round

  2. positive
  3. positive

162 papers more in this group

See all 166 papers →

phosphorus · yield · Oryza sativa (rice)Positive and negative results

475 papers: 419 positive, 56 negative or no effect

418 papers in the same direction as this paper · 46 in the opposite direction · 10 reporting no difference from an alternative

This paper is about lacking the nutrient, so it counts the other way round here.

  1. negative
    The improved line exceeded Nipponbare in grain yield by 250% under P deficiency.

    Genotypic variation for tolerance to phosphorus deficiency in rice and the potential for its exploitation in rice improvement · 2001 · compared with ‘Nipponbare’

    Opposite directionCited by this paperAbout lacking this nutrient, so it counts the other way round

  2. positive
  3. no effect

471 papers more in this group

See all 475 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.