Paper · 2015 · Radiation Research

Development-Dependent Expression of DNA Repair Genes and Epigenetic Regulators in Arabidopsis Plants Exposed to Ionizing Radiation

Corinne Sidler; Dongping Li; Olga Kovalchuk; et al.

10
claims
20
verbatim quotes
23
citations
3
research areas
—
Not open access

Abstract

Both plant senescence and plant response to ionizing radiation involve changes in gene expression and epigenetic profiles, that rely on the formation of reactive oxygen species. However, how the developmental stage of a plant affects its response to ionizing radiation has not been extensively studied. In this study, our experiments showed that exposure to low (10 Gy) and high (100 Gy) doses of ionizing radiation causes developmental delays in plants that may result in reduced biomass or even death of the organism. In particular, 20-day-old plants, which are in the process of transitioning to reproductive growth, showed a distinct response to irradiation compared to 10- or 30-day-old irradiated plants that affects the expression of DNA repair genes. Specifically, we found that the expression of mismatch repair genes was increased in 20-day-old plants, while RAD51 was increased in 10- and 30-day-old plants. Furthermore, we found increased expression of MET1, CMT3 and SUVH5 epigenetic regulators that paralleled decreased ONSEN transcript levels in 20-day-old irradiated plants. These findings suggest that plants exposed during early reproductive growth exhibit a tighter control over genome stability in response to ionizing irradiation compared to plants irradiated at other developmental stages.

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Claims 10

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Ionizing radiation caused developmental delays.

Taxon
ArabidopsisArabidopsist0
Treatment
ionizing radiatione0
Outcome
developmental delayse0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“exposure to low (10 Gy) and high (100 Gy) doses of ionizing radiation causes developmental delays in plants”

✓ located verbatim in the source · abstract, characters 346–453 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 82–93 · show in text ↑
Intervention effectauthor interpretationoriginal resultnegativemeasured

Claim · model-written summary

Ionizing radiation may reduce biomass or kill plants.

Taxon
ArabidopsisArabidopsist0
Treatment
ionizing radiationt0
Outcome
reduced biomass or even death of the organisme0
Direction
reducede0
Qualifier
may resulte0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“developmental delays in plants that may result in reduced biomass or even death of the organism”

✓ located verbatim in the source · abstract, characters 423–518 · show in text ↑
t0

“Arabidopsis Plants Exposed to Ionizing Radiation”

✓ located verbatim in the source · title, characters 82–130 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Twenty day old irradiated plants showed a distinct DNA repair gene response from 10 and 30 day old plants.

Taxon
ArabidopsisArabidopsist0
Organ / stage
20-day-old plantse0
Outcome
expression of DNA repair genese0
Comparator
10- or 30-day-old irradiated plantse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“20-day-old plants, which are in the process of transitioning to reproductive growth, showed a distinct response to irradiation compared to 10- or 30-day-old irradiated plants that affects the expression of DNA repair genes”

✓ located verbatim in the source · abstract, characters 535–757 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 82–93 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Mismatch repair genes increased in irradiated 20 day old plants.

Taxon
ArabidopsisArabidopsist0
Organ / stage
20-day-old plantse0
Gene
mismatch repair genese0
Outcome
expressione0
Direction
increasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“expression of mismatch repair genes was increased in 20-day-old plants”

✓ located verbatim in the source · abstract, characters 791–861 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 82–93 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

RAD51 expression increased in irradiated 10 and 30 day old plants.

Taxon
ArabidopsisArabidopsist0
Organ / stage
10- and 30-day-old plantse0
Gene
RAD51e0
Outcome
RAD51e0
Direction
increasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“RAD51 was increased in 10- and 30-day-old plants”

✓ located verbatim in the source · abstract, characters 869–917 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 82–93 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

MET1 expression increased in irradiated 20 day old plants.

Taxon
ArabidopsisArabidopsist0
Gene
MET1e0
Outcome
expressione0
Direction
increasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“increased expression of MET1, CMT3 and SUVH5 epigenetic regulators”

✓ located verbatim in the source · abstract, characters 941–1007 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 82–93 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

CMT3 expression increased in irradiated 20 day old plants.

Taxon
ArabidopsisArabidopsist0
Gene
CMT3e0
Outcome
expressione0
Direction
increasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“increased expression of MET1, CMT3 and SUVH5 epigenetic regulators”

✓ located verbatim in the source · abstract, characters 941–1007 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 82–93 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

SUVH5 expression increased in irradiated 20 day old plants.

Taxon
ArabidopsisArabidopsist0
Gene
SUVH5e0
Outcome
expressione0
Direction
increasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“increased expression of MET1, CMT3 and SUVH5 epigenetic regulators”

✓ located verbatim in the source · abstract, characters 941–1007 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 82–93 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

ONSEN transcript levels decreased in irradiated 20 day old plants.

Taxon
ArabidopsisArabidopsist0
Organ / stage
20-day-old irradiated plantse0
Gene
ONSENe0
Outcome
transcript levelse0
Direction
decreasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“decreased ONSEN transcript levels in 20-day-old irradiated plants”

✓ located verbatim in the source · abstract, characters 1024–1089 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 82–93 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Authors infer tighter genome stability control during early reproductive growth after irradiation.

Taxon
ArabidopsisArabidopsist0
Organ / stage
early reproductive growthe0
Outcome
tighter control over genome stabilitye0
Comparator
plants irradiated at other developmental stagese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“plants exposed during early reproductive growth exhibit a tighter control over genome stability in response to ionizing irradiation compared to plants irradiated at other developmental stages”

✓ located verbatim in the source · abstract, characters 1119–1310 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 82–93 · show in text ↑

radiation · growth · ArabidopsisPositive and negative results

7 papers: 3 positive, 4 negative or no effect

3 papers in the same direction as this paper · 3 in the opposite direction

  1. positive
  2. positive
  3. positive

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.