Paper · 2010 · Plant Molecular Biology

Control of somatic embryogenesis and embryo development by AP2 transcription factors

Souad El Ouakfaoui; Jaimie Schnell; Ashraf Abdeen; et al.

8
claims
8
verbatim quotes
179
citations
2
research areas
✓
Open access · cc-by-nc

Abstract

Members of the AP2 family of transcription factors, such as BABY BOOM (BBM), play important roles in cell proliferation and embryogenesis in Arabidopsis thaliana (AtBBM) and Brassica napus (BnBBM) but how this occurs is not understood. We have isolated three AP2 genes (GmBBM1, GmAIL5, GmPLT2) from somatic embryo cultures of soybean, Glycine max (L.) Merr, and discovered GmBBM1 to be homologous to AtBBM and BnBBM. GmAIL5 and GmPLT2 were homologous to Arabidopsis AINTEGUMENTA-like5 (AIL5) and PLETHORA2 (PLT2), respectively. Constitutive expression of GmBBM1 in Arabidopsis induced somatic embryos on vegetative organs and other pleiotropic effects on post-germinative vegetative organ development. Sequence comparisons of BBM orthologues revealed the presence of ten sequence motifs outside of the AP2 DNA-binding domains. One of the motifs, bbm-1, was specific to the BBM-like genes. Deletion and domain swap analyses revealed that bbm-1 was important for somatic embryogenesis and acted cooperatively with at least one other motif, euANT2, in the regulation of somatic embryogenesis and embryo development in transgenic Arabidopsis. The results provide new insights into the mechanisms by which BBM governs embryogenesis.

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Claims 8

Observationobservedoriginal resultmeasured

Claim · model-written summary

Three AP2 genes were isolated from soybean somatic embryo cultures.

Taxon
Glycine max (L.) MerrGlycine maxe0
Organ / stage
somatic embryo culturese0
Gene
GmBBM1, GmAIL5, GmPLT2e0
Outcome
AP2 genese0
Value
threee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“isolated three AP2 genes (GmBBM1, GmAIL5, GmPLT2) from somatic embryo cultures of soybean, Glycine max (L.) Merr”

✓ located verbatim in the source · abstract, characters 244–356 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

GmBBM1 was homologous to AtBBM and BnBBM.

Gene
GmBBM1e0
Outcome
homologous to AtBBM and BnBBMe0

Not reportedTaxon

Verbatim

e0

“GmBBM1 to be homologous to AtBBM and BnBBM”

✓ located verbatim in the source · abstract, characters 373–415 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

GmAIL5 and GmPLT2 were homologous to AIL5 and PLT2, respectively.

Taxon
ArabidopsisArabidopsise0
Gene
GmAIL5 and GmPLT2e0
Outcome
homologouse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“GmAIL5 and GmPLT2 were homologous to Arabidopsis AINTEGUMENTA-like5 (AIL5) and PLETHORA2 (PLT2), respectively”

✓ located verbatim in the source · abstract, characters 417–526 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Constitutive GmBBM1 expression induced somatic embryos on Arabidopsis vegetative organs.

Taxon
ArabidopsisArabidopsise0
Organ / stage
vegetative organse0
Treatment
Constitutive expression of GmBBM1e0
Gene
GmBBM1e0
Outcome
somatic embryose0
Direction
inducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Constitutive expression of GmBBM1 in Arabidopsis induced somatic embryos on vegetative organs”

✓ located verbatim in the source · abstract, characters 528–621 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Constitutive GmBBM1 expression also caused other pleiotropic effects on post-germinative vegetative organ development.

Taxon
ArabidopsisArabidopsise0
Organ / stage
post-germinative vegetative organe0
Treatment
Constitutive expression of GmBBM1e0
Gene
GmBBM1e0
Outcome
other pleiotropic effects on post-germinative vegetative organ developmente0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Constitutive expression of GmBBM1 in Arabidopsis induced somatic embryos on vegetative organs and other pleiotropic effects on post-germinative vegetative organ development”

✓ located verbatim in the source · abstract, characters 528–700 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Sequence comparisons revealed ten motifs outside the AP2 DNA-binding domains.

Gene
BBM orthologuese0
Outcome
sequence motifse0
Value
tene0

Not reportedTaxon

Verbatim

e0

“Sequence comparisons of BBM orthologues revealed the presence of ten sequence motifs outside of the AP2 DNA-binding domains”

✓ located verbatim in the source · abstract, characters 702–825 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The bbm-1 motif was specific to BBM-like genes.

Gene
bbm-1e0
Outcome
specific to the BBM-like genese0

Not reportedTaxon

Verbatim

e0

“bbm-1, was specific to the BBM-like genes”

✓ located verbatim in the source · abstract, characters 846–887 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

The bbm-1 motif was important for somatic embryogenesis and cooperated with euANT2 in embryogenesis regulation.

Taxon
ArabidopsisArabidopsise0
Gene
bbm-1e0
Outcome
somatic embryogenesis and embryo developmente0
Qualifier
acted cooperatively with at least one other motif, euANT2e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“bbm-1 was important for somatic embryogenesis and acted cooperatively with at least one other motif, euANT2, in the regulation of somatic embryogenesis and embryo development in transgenic Arabidopsis”

✓ located verbatim in the source · abstract, characters 937–1137 · show in text ↑

overexpression · growth · ArabidopsisPositive and negative results

109 papers: 71 positive, 38 negative or no effect

70 papers in the same direction as this paper · 38 in the opposite direction

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  2. negative
  3. negative

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.