Paper · 2010 · Biologia Plantarum

Development of AFLP and STS markers linked to a waterlogging tolerance in Korean soybean landraces

S. -Y. Kang; K. J. Lee; G. -J. Lee; et al.

7
claims
14
verbatim quotes
7
citations
3
research areas
—
Not open access

Abstract

Among the 400 soybean (Glycine max) landraces, we selected 3 tolerant (KAS150-9, KAS160-15, and KAS170-9) and 3 susceptible lines (KAS160-14, KAS160-20, and KAS201-6-1) by the survival percentage and injury scores. Susceptible lines showed decrease in chlorophyll content and increase in glucose and malondialdehyde (MDA) contents under waterlogging stress, while tolerant lines did not change significantly. For AFLP analysis, 8 EcoRI (+3) and 8 MseI (+3) primers used in 32 primer combinations generated a total of 2 566 bands with a mean of 80 bands per primer combination, of which 1 117 (43.5 %) were clearly polymorphic between the tolerant and susceptible lines. A genetic similarity coefficient, based on cluster analysis using an unweighted pair grouping method of average (UPGMA), was 0.79 for the tolerant group, while the susceptible landraces were genetically less related, with a genetic similarity coefficient of 0.17. The 10 reproducible polymorphic PCR products present in the 3 tolerant or susceptible lines were sequenced and converted into sequence tagged site (STS) markers. These STS primer sets were designated GmWT01-GmWT06 and GmWS01-GmWS04. Two STS primer sets, GmWT06 and GmWS02, generated a single monomorphic PCR product identical in size to the original AFLP fragments. For the broad application of these STS markers in marker-assisted selection (MAS) for soybean genotypes tolerant to waterlogging stress, two developed STS markers are being evaluated with putative waterlogging tolerant mutant lines induced by γ-radiation in soybean mutation breeding programs.

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Claims 7

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Susceptible soybean lines showed a decrease in chlorophyll content under waterlogging stress.

Taxon
soybeanGlycine maxe2
Material
KAS160-14, KAS160-20, and KAS201-6-1e2
Treatment
waterlogging stresse1
Outcome
chlorophyll contente1
Direction
decreasee1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e1

“Susceptible lines showed decrease in chlorophyll content and increase in glucose and malondialdehyde (MDA) contents under waterlogging stress, while tolerant lines did not change significantly”

✓ located verbatim in the source · abstract, characters 215–407 · show in text ↑
e2

“Among the 400 soybean (Glycine max) landraces, we selected 3 tolerant (KAS150-9, KAS160-15, and KAS170-9) and 3 susceptible lines (KAS160-14, KAS160-20, and KAS201-6-1) by the survival percentage and injury scores”

✓ located verbatim in the source · abstract, characters 0–213 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Susceptible soybean lines showed an increase in glucose and malondialdehyde (MDA) contents under waterlogging stress.

Taxon
soybeanGlycine maxe2
Material
KAS160-14, KAS160-20, and KAS201-6-1e2
Treatment
waterlogging stresse1
Outcome
glucose and malondialdehyde (MDA) contentse1
Direction
increasee1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e1

“Susceptible lines showed decrease in chlorophyll content and increase in glucose and malondialdehyde (MDA) contents under waterlogging stress, while tolerant lines did not change significantly”

✓ located verbatim in the source · abstract, characters 215–407 · show in text ↑
e2

“Among the 400 soybean (Glycine max) landraces, we selected 3 tolerant (KAS150-9, KAS160-15, and KAS170-9) and 3 susceptible lines (KAS160-14, KAS160-20, and KAS201-6-1) by the survival percentage and injury scores”

✓ located verbatim in the source · abstract, characters 0–213 · show in text ↑
Intervention effectobservedoriginal resultno effectnot significant (as stated)measured

Claim · model-written summary

Tolerant soybean lines did not change significantly in chlorophyll, glucose or MDA contents under waterlogging stress.

Taxon
soybeanGlycine maxe2
Material
KAS150-9, KAS160-15, and KAS170-9e2
Treatment
waterlogging stresse1
Outcome
contentse1
Direction
did not change significantlye1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e1

“Susceptible lines showed decrease in chlorophyll content and increase in glucose and malondialdehyde (MDA) contents under waterlogging stress, while tolerant lines did not change significantly”

✓ located verbatim in the source · abstract, characters 215–407 · show in text ↑
e2

“Among the 400 soybean (Glycine max) landraces, we selected 3 tolerant (KAS150-9, KAS160-15, and KAS170-9) and 3 susceptible lines (KAS160-14, KAS160-20, and KAS201-6-1) by the survival percentage and injury scores”

✓ located verbatim in the source · abstract, characters 0–213 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Of 2 566 AFLP bands, 1 117 (43.5 %) were clearly polymorphic between the tolerant and susceptible soybean lines.

Taxon
soybeanGlycine maxe2
Material
tolerant and susceptible linese3
Outcome
clearly polymorphice3
Value
43.5 %e3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e2

“Among the 400 soybean (Glycine max) landraces, we selected 3 tolerant (KAS150-9, KAS160-15, and KAS170-9) and 3 susceptible lines (KAS160-14, KAS160-20, and KAS201-6-1) by the survival percentage and injury scores”

✓ located verbatim in the source · abstract, characters 0–213 · show in text ↑
e3

“For AFLP analysis, 8 EcoRI (+3) and 8 MseI (+3) primers used in 32 primer combinations generated a total of 2 566 bands with a mean of 80 bands per primer combination, of which 1 117 (43.5 %) were clearly polymorphic between the tolerant and susceptible lines”

✓ located verbatim in the source · abstract, characters 409–668 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The genetic similarity coefficient of the tolerant soybean group was 0.79.

Taxon
soybeanGlycine maxe2
Material
tolerant groupe4
Outcome
genetic similarity coefficiente4
Value
0.79e4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e2

“Among the 400 soybean (Glycine max) landraces, we selected 3 tolerant (KAS150-9, KAS160-15, and KAS170-9) and 3 susceptible lines (KAS160-14, KAS160-20, and KAS201-6-1) by the survival percentage and injury scores”

✓ located verbatim in the source · abstract, characters 0–213 · show in text ↑
e4

“A genetic similarity coefficient, based on cluster analysis using an unweighted pair grouping method of average (UPGMA), was 0.79 for the tolerant group, while the susceptible landraces were genetically less related, with a genetic similarity coefficient of 0.17”

✓ located verbatim in the source · abstract, characters 670–932 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The genetic similarity coefficient of the susceptible soybean landraces was 0.17.

Taxon
soybeanGlycine maxe2
Material
susceptible landracese4
Outcome
genetic similarity coefficiente4
Value
0.17e4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e2

“Among the 400 soybean (Glycine max) landraces, we selected 3 tolerant (KAS150-9, KAS160-15, and KAS170-9) and 3 susceptible lines (KAS160-14, KAS160-20, and KAS201-6-1) by the survival percentage and injury scores”

✓ located verbatim in the source · abstract, characters 0–213 · show in text ↑
e4

“A genetic similarity coefficient, based on cluster analysis using an unweighted pair grouping method of average (UPGMA), was 0.79 for the tolerant group, while the susceptible landraces were genetically less related, with a genetic similarity coefficient of 0.17”

✓ located verbatim in the source · abstract, characters 670–932 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Two STS primer sets, GmWT06 and GmWS02, generated a single monomorphic PCR product identical in size to the original AFLP fragments in soybean.

Taxon
soybeanGlycine maxe2
Gene
GmWT06 and GmWS02e5
Outcome
single monomorphic PCR producte5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e2

“Among the 400 soybean (Glycine max) landraces, we selected 3 tolerant (KAS150-9, KAS160-15, and KAS170-9) and 3 susceptible lines (KAS160-14, KAS160-20, and KAS201-6-1) by the survival percentage and injury scores”

✓ located verbatim in the source · abstract, characters 0–213 · show in text ↑
e5

“Two STS primer sets, GmWT06 and GmWS02, generated a single monomorphic PCR product identical in size to the original AFLP fragments”

✓ located verbatim in the source · abstract, characters 1167–1298 · show in text ↑

flooding · physiology: pigments · Glycine max (soybean)Positive and negative results

11 papers: 1 positive, 10 negative or no effect

9 papers in the same direction as this paper · 1 in the opposite direction

  1. positive
  2. negative
  3. negative

7 papers more in this group

See all 11 papers →

flooding · physiology: oxidative · Glycine max (soybean)Results agree

11 papers: 0 positive, 11 negative or no effect

10 papers in the same direction as this paper

  1. negative
  2. negative
  3. negative

7 papers more in this group

See all 11 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.