Abstract

The perception of Phytophthora sojae avirulence (Avr) gene products by corresponding soybean resistance (Rps) gene products causes effector triggered immunity. Past studies have shown that the Avr3a and Avr5 genes of P. sojae are genetically linked, and the Avr3a gene encoding a secreted RXLR effector protein was recently identified. We now provide evidence that Avr3a and Avr5 are allelic. Genetic mapping data from F(2) progeny indicates that Avr3a and Avr5 co-segregate, and haplotype analysis of P. sojae strain collections reveal sequence and transcriptional polymorphisms that are consistent with a single genetic locus encoding Avr3a/5. Transformation of P. sojae and transient expression in soybean were performed to test how Avr3a/5 alleles interact with soybean Rps3a and Rps5. Over-expression of Avr3a/5 in a P. sojae strain that is normally virulent on Rps3a and Rps5 results in avirulence to Rps3a and Rps5; whereas silencing of Avr3a/5 causes gain of virulence in a P. sojae strain that is normally avirulent on Rps3a and Rps5 soybean lines. Transient expression and co-bombardment with a reporter gene confirms that Avr3a/5 triggers cell death in Rps5 soybean leaves in an appropriate allele-specific manner. Sequence analysis of the Avr3a/5 gene identifies crucial residues in the effector domain that distinguish recognition by Rps3a and Rps5.

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Claims 6

Observationobservedoriginal resultmeasured

Claim · model-written summary

Avr3a and Avr5 alleles co-segregated.

Taxon
SoybeanGlycine maxt0
Interactor
Phytophthora sojaePhytophthora sojaet0pathogen
Gene
Avr3a and Avr5e0
Outcome
co-segregatee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Genetic mapping data from F(2) progeny indicates that Avr3a and Avr5 co-segregate”

✓ located verbatim in the source · abstract, characters 393–474 · show in text ↑
t0

“Sequence Variants of the Phytophthora sojae RXLR Effector Avr3a/5 Are Differentially Recognized by Rps3a and Rps5 in Soybean”

✓ located verbatim in the source · title, characters 0–124 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Phytophthora sojae haplotypes and transcription patterns supported a single Avr3a/5 locus.

Taxon
SoybeanGlycine maxt0
Interactor
P. sojaePhytophthora sojaee0pathogen
Gene
Avr3a/5e0
Outcome
single genetic locus encoding Avr3a/5e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“haplotype analysis of P. sojae strain collections reveal sequence and transcriptional polymorphisms that are consistent with a single genetic locus encoding Avr3a/5”

✓ located verbatim in the source · abstract, characters 480–644 · show in text ↑
t0

“Soybean”

✓ located verbatim in the source · title, characters 117–124 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Avr3a/5 overexpression made a normally virulent strain avirulent on Rps3a and Rps5 soybean.

Taxon
SoybeanGlycine maxt0
Treatment
Over-expression of Avr3a/5e0
Interactor
P. sojaePhytophthora sojaee0pathogen
Gene
Avr3a/5e0
Outcome
avirulence to Rps3a and Rps5e0
Comparator
normally virulente0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Over-expression of Avr3a/5 in a P. sojae strain that is normally virulent on Rps3a and Rps5 results in avirulence to Rps3a and Rps5”

✓ located verbatim in the source · abstract, characters 790–921 · show in text ↑
t0

“Soybean”

✓ located verbatim in the source · title, characters 117–124 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Avr3a/5 silencing caused gain of virulence on Rps3a and Rps5 soybean lines.

Taxon
soybeanGlycine maxe0
Treatment
silencing of Avr3a/5e0
Interactor
P. sojaePhytophthora sojaee0pathogen
Gene
Avr3a/5e0
Outcome
virulencee0
Direction
gaine0
Comparator
normally avirulente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“silencing of Avr3a/5 causes gain of virulence in a P. sojae strain that is normally avirulent on Rps3a and Rps5 soybean lines”

✓ located verbatim in the source · abstract, characters 931–1056 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Avr3a/5 triggered allele-specific cell death in Rps5 soybean leaves.

Taxon
soybeanGlycine maxe0
Material
Rps5e0
Organ / stage
leavese0
Gene
Avr3a/5e0
Outcome
cell deathe0

Not reportedInteractor

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Avr3a/5 triggers cell death in Rps5 soybean leaves in an appropriate allele-specific manner”

✓ located verbatim in the source · abstract, characters 1133–1224 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Effector-domain residues distinguished Rps3a and Rps5 recognition.

Taxon
SoybeanGlycine maxt0
Gene
Avr3a/5e0
Outcome
recognition by Rps3a and Rps5e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Sequence analysis of the Avr3a/5 gene identifies crucial residues in the effector domain that distinguish recognition by Rps3a and Rps5”

✓ located verbatim in the source · abstract, characters 1226–1361 · show in text ↑
t0

“Soybean”

✓ located verbatim in the source · title, characters 117–124 · show in text ↑

loss of function · Phytophthora sojae · Glycine max (soybean)Positive and negative results

24 papers: 9 positive, 15 negative or no effect

14 papers in the same direction as this paper · 9 in the opposite direction

  1. no effect
  2. negative
  3. negative

20 papers more in this group

See all 24 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.