Paper · 2013 · PLoS ONE

Proteomic and Biochemical Analyses of the Cotyledon and Root of Flooding-Stressed Soybean Plants

Setsuko Komatsu; Takahiro Makino; Hiroshi Yasue

8
claims
16
verbatim quotes
51
citations
2
research areas
✓
Open access · cc-by

Abstract

BACKGROUND: Flooding significantly reduces the growth and grain yield of soybean plants. Proteomic and biochemical techniques were used to determine whether the function of cotyledon and root is altered in soybean under flooding stress. RESULTS: Two-day-old soybean plants were flooded for 2 days, after which the proteins from root and cotyledon were extracted for proteomic analysis. In response to flooding stress, the abundance of 73 and 28 proteins was significantly altered in the root and cotyledon, respectively. The accumulation of only one protein, 70 kDa heat shock protein (HSP70) (Glyma17g08020.1), increased in both organs following flooding. The ratio of protein abundance of HSP70 and biophoton emission in the cotyledon was higher than those detected in the root under flooding stress. Computed tomography and elemental analyses revealed that flooding stress decreases the number of calcium oxalate crystal the cotyledon, indicating calcium ion was elevated in the cotyledon under flooding stress. CONCLUSION: These results suggest that calcium might play one role through HSP70 in the cotyledon under flooding stress.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 8

Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Flooding significantly altered abundance of 73 root proteins.

Taxon
SoybeanGlycine maxt0
Organ / stage
roote0
Treatment
flooding stresse0
Outcome
proteinse0
Direction
alterede0
Value
73e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean Plants”

✓ located verbatim in the source · title, characters 82–96 · show in text ↑
e0

“In response to flooding stress, the abundance of 73 and 28 proteins was significantly altered in the root and cotyledon, respectively”

✓ located verbatim in the source · abstract, characters 386–519 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Flooding significantly altered abundance of 28 cotyledon proteins.

Taxon
SoybeanGlycine maxt0
Organ / stage
cotyledone0
Treatment
flooding stresse0
Outcome
proteinse0
Direction
alterede0
Value
28e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean Plants”

✓ located verbatim in the source · title, characters 82–96 · show in text ↑
e0

“In response to flooding stress, the abundance of 73 and 28 proteins was significantly altered in the root and cotyledon, respectively”

✓ located verbatim in the source · abstract, characters 386–519 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

HSP70 abundance increased in both organs after flooding.

Taxon
SoybeanGlycine maxt0
Organ / stage
both organse0
Treatment
floodinge0
Gene
70 kDa heat shock protein (HSP70) (Glyma17g08020.1)e0
Outcome
accumulation of only one proteine0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean Plants”

✓ located verbatim in the source · title, characters 82–96 · show in text ↑
e0

“The accumulation of only one protein, 70 kDa heat shock protein (HSP70) (Glyma17g08020.1), increased in both organs following flooding”

✓ located verbatim in the source · abstract, characters 521–655 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The HSP70 protein abundance ratio was higher in flooded cotyledon than root.

Taxon
SoybeanGlycine maxt0
Organ / stage
cotyledone0
Gene
HSP70e0
Outcome
protein abundance of HSP70e0
Direction
highere0
Comparator
roote0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean Plants”

✓ located verbatim in the source · title, characters 82–96 · show in text ↑
e0

“The ratio of protein abundance of HSP70 and biophoton emission in the cotyledon was higher than those detected in the root under flooding stress”

✓ located verbatim in the source · abstract, characters 657–801 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Biophoton emission ratio was higher in flooded cotyledon than root.

Taxon
SoybeanGlycine maxt0
Organ / stage
cotyledone0
Outcome
biophoton emissione0
Direction
highere0
Comparator
roote0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean Plants”

✓ located verbatim in the source · title, characters 82–96 · show in text ↑
e0

“The ratio of protein abundance of HSP70 and biophoton emission in the cotyledon was higher than those detected in the root under flooding stress”

✓ located verbatim in the source · abstract, characters 657–801 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Flooding decreased calcium oxalate crystal number in the cotyledon.

Taxon
SoybeanGlycine maxt0
Organ / stage
cotyledone0
Treatment
flooding stresse0
Outcome
number of calcium oxalate crystale0
Direction
decreasese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean Plants”

✓ located verbatim in the source · title, characters 82–96 · show in text ↑
e0

“flooding stress decreases the number of calcium oxalate crystal the cotyledon”

✓ located verbatim in the source · abstract, characters 860–937 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Cotyledon calcium ion was inferred to rise under flooding.

Taxon
SoybeanGlycine maxt0
Organ / stage
cotyledone0
Outcome
calcium ione0
Direction
elevatede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean Plants”

✓ located verbatim in the source · title, characters 82–96 · show in text ↑
e0

“indicating calcium ion was elevated in the cotyledon under flooding stress”

✓ located verbatim in the source · abstract, characters 939–1013 · show in text ↑
Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

Calcium may act through HSP70 in the flooded cotyledon.

Taxon
SoybeanGlycine maxt0
Organ / stage
cotyledone0
Gene
HSP70e0
Compound
calciume0
Outcome
role through HSP70e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Soybean Plants”

✓ located verbatim in the source · title, characters 82–96 · show in text ↑
e0

“These results suggest that calcium might play one role through HSP70 in the cotyledon under flooding stress”

✓ located verbatim in the source · abstract, characters 1027–1134 · show in text ↑

flooding · quality: protein · Glycine max (soybean)Results differ

8 papers: 3 positive, 5 negative or no effect

2 papers in the same direction as this paper · 5 in the opposite direction

  1. negative
  2. negative
  3. no effect

4 papers more in this group

See all 8 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.