Paper · 2009 · eScholarship (California Digital Library)

Analysis of nitrogen use efficient rice over-expressing a barley alanine aminotransferase

Perrin H. Beatty; Rebecka T. Carroll; Ashok K. Shrawat; et al.

5
claims
10
verbatim quotes
1
citations
3
research areas
✓
Open access

Abstract

Nitrogen (N) is a crucial plant nutrient that farmers tend to apply to their crops in excess in order to gain high yields. However, crop plants are generally inefficient at N uptake from the soil, much of the applied N fertilizers are lost to the plant through leaching, volatization and by microbial action. It is important to breed and/or design nitrogen use efficient (NUE) crop plants that can produce the same, or higher yields with less applied N fertilizer. Growth of NUE crops, coupled with implementation of best fertilizer management practices, would reduce the need for N fertilizer application, reducing both costs to the farmer and environmental pollution.We have recently genetically engineered rice (Oryza sativa L.) by introducing a barley alanine aminotransferase (AlaAT) cDNA driven by a rice tissue specific promoter (Shrawat et. al., 2008). The transgenic rice showed significantly increased biomass and grain yield compared to control plants when grown at a fixed, high amount of ammonium. We also analysed the transcriptomic profile of these transgenic plants using Affymetrix Rice GeneChip microarrays (Beatty et al., 2009). In the current study, we compared various physiological and genetic data from alanine aminotransferase over-expressing transgenic plants to control plants grown at three different nitrogen levels and demonstrated significant changes between them. Our studies demonstrate that the manipulation of AlaAT can be affected by the level of available nitrogen. In addition, certain transcripts in the transgenic lines can be influenced by nitrogen levels as well.

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Claims 5

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Previously engineered AlaAT rice had significantly increased biomass at fixed high ammonium.

Treatment
introducing a barley alanine aminotransferase (AlaAT) cDNAe1
Outcome
biomasse0
Direction
increasede0
Qualifier
a fixed, high amount of ammoniume0
Comparator
control plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“transgenic rice showed significantly increased biomass and grain yield compared to control plants when grown at a fixed, high amount of ammonium”

✓ located verbatim in the source · abstract, characters 865–1009 · show in text ↑
e1

“introducing a barley alanine aminotransferase (AlaAT) cDNA”

✓ located verbatim in the source · abstract, characters 735–793 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Previously engineered AlaAT rice had significantly increased grain yield at fixed high ammonium.

Treatment
introducing a barley alanine aminotransferase (AlaAT) cDNAe1
Outcome
grain yielde0
Direction
increasede0
Qualifier
a fixed, high amount of ammoniume0
Comparator
control plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“transgenic rice showed significantly increased biomass and grain yield compared to control plants when grown at a fixed, high amount of ammonium”

✓ located verbatim in the source · abstract, characters 865–1009 · show in text ↑
e1

“introducing a barley alanine aminotransferase (AlaAT) cDNA”

✓ located verbatim in the source · abstract, characters 735–793 · show in text ↑
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

AlaAT-overexpressing rice differed significantly in physiological and genetic data from controls across three nitrogen levels.

Outcome
physiological and genetic datae0
Direction
changese0
Qualifier
three different nitrogen levelse0
Comparator
control plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“compared various physiological and genetic data from alanine aminotransferase over-expressing transgenic plants to control plants grown at three different nitrogen levels and demonstrated significant changes between them”

✓ located verbatim in the source · abstract, characters 1173–1393 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 35–39 · show in text ↑
Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

The effect of AlaAT manipulation depended on available nitrogen level.

Gene
AlaATe0
Outcome
manipulation of AlaATe0
Qualifier
level of available nitrogene0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“manipulation of AlaAT can be affected by the level of available nitrogen”

✓ located verbatim in the source · abstract, characters 1428–1500 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 35–39 · show in text ↑
Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Nitrogen level influenced certain transcripts in transgenic rice.

Material
transgenic linese0
Outcome
certain transcriptse0
Qualifier
nitrogen levelse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“certain transcripts in the transgenic lines can be influenced by nitrogen levels as well”

✓ located verbatim in the source · abstract, characters 1515–1603 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 35–39 · show in text ↑

Hordeum vulgare · growth · Oryza sativa (rice)Positive and negative results

4 papers: 3 positive, 1 negative or no effect

2 papers in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
  3. positive
See all 4 papers →

Hordeum vulgare · yield · Oryza sativa (rice)Positive and negative results

7 papers: 5 positive, 2 negative or no effect

4 papers in the same direction as this paper · 2 in the opposite direction

  1. negative
  2. negative
  3. positive

3 papers more in this group

See all 7 papers →

alanine · yield · Oryza sativa (rice)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

alanine · growth · Oryza sativa (rice)Results agree

5 papers: 5 positive, 0 negative or no effect

4 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

1 paper more in this group

See all 5 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.