By organism › Bacteria › Burkholderiaceae › Burkholderia glumae

Observationobservedoriginal resultmeasured

Claim · model-written summary

Genome sequence analysis of the six selected strains revealed the presence of multiple prophages.

Taxon: Burkholderia glumaeBurkholderia glumaet0
Outcome: presence of multiple prophagese1

Verbatim

t0
“Burkholderia glumae”
✓ located verbatim in the source · title, characters 62–81

e1
“Our genome sequence analysis of the six selected strains revealed the presence of multiple prophages”
✓ located verbatim in the source · abstract, characters 575–675

Title

Phylogenetic Characterization and Genome Sequence Analysis of Burkholderia glumae Strains Isolated in Thailand as the Causal Agent of Rice Bacterial Panicle Blight

Nootjarin Jungkhun; Antonio Roberto Gomes de Farias; Jutatape Watcharachaiyakup; et al. Pathogens 2022. doi:10.3390/pathogens11060676

Other claims from this paper (4)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Phylogenetic and phylogenomic analyses showed several subgroups of B. glumae not related to the years of isolation or geographical origins.

Taxon: Burkholderia glumaeBurkholderia glumaet0
Outcome: formation of several subgroupse1
Qualifier: not related to the years of isolation or the geographical originse1

Verbatim

t0
“Burkholderia glumae”
✓ located verbatim in the source · title, characters 62–81

e1
“the formation of several subgroups not related to the years of isolation or the geographical origins”
✓ located verbatim in the source · abstract, characters 925–1025

Title

Phylogenetic Characterization and Genome Sequence Analysis of Burkholderia glumae Strains Isolated in Thailand as the Causal Agent of Rice Bacterial Panicle Blight

Nootjarin Jungkhun; Antonio Roberto Gomes de Farias; Jutatape Watcharachaiyakup; et al. Pathogens 2022. doi:10.3390/pathogens11060676

Other claims from this paper (4)

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Disruption of PCD significantly affected phytotoxin production in B. glumae, with direction unspecified.

Taxon: B. glumaeBurkholderia glumaee0
Treatment: disruption of PCD genee0
Gene: PCD genee0
Outcome: phytotoxin productione0

Not reportedComparatorDirection

Verbatim

e0
“In particular, the disruption of PCD gene led to attenuated virulence in all pathogens and significantly affected phytotoxin production in B. glumae .”
✓ located verbatim in the source · abstract, characters 1116–1266

Title

Genome-guided comparative in planta transcriptome analyses for identifying cross-species common virulence factors in bacterial phytopathogens

Jungwook Park; Hyejung Jung; Mohamed Mannaa; et al. Frontiers in Plant Science 2022. doi:10.3389/fpls.2022.1030720

Other claims from this paper (8)

Observationobservedreview summarymeasured

Claim · model-written summary

B. glumae can survive at 41°C.

Taxon: Burkholderia glumaeBurkholderia glumaet0
Outcome: survivee0
Value: 41°Ce0

Verbatim

e0
“the pathogen could survive at a temperature of 41°C”
✓ located verbatim in the source · abstract, characters 780–831

t0
“Burkholderia glumae on Rice”
✓ located verbatim in the source · title, characters 47–74

Title

Detection and Control Bacteria Cause Grain Rot Burkholderia glumae on Rice

Syahri Syahri; Renny Utami Somantri; Priatna Sasmita Jurnal Perlindungan Tanaman Indonesia 2019. doi:10.22146/jpti.37755

Other claims from this paper (12)

Observation B. glumae grain rot can reduce rice yield by up to 75%.
Observation B. glumae causes decreased grain weight in rice.
Observation B. glumae causes an increase in empty grain in rice.
Association Warm nights and high rainfall affect grain rot intensity.
Observation The optimum temperature for disease development is 30–35°C.
Observation The authors report that effective field control has not been found.
Observation The authors report that early disease detection remains undetermined.
Recommendation The review recommends screening imported seed for B. glumae.
Recommendation The review recommends frequent field surveillance in rice production areas.
Recommendation The review identifies resistant varieties as a prevention strategy.
Recommendation The review identifies seed treatments as a prevention strategy.
Recommendation The review identifies oxolinic acid application as a prevention strategy.

Observationobservedoriginal resultmeasured

Claim · model-written summary

B. glumae produces and secretes two highly similar endo-polygalacturonases, PehA and PehB.

Taxon: B. glumaeBurkholderia glumaee0
Gene: PehA and PehBe0
Outcome: production and secretion of two highly similar endo-polygalacturonasese0

Verbatim

e0
“This study reports the production and secretion of two highly similar endo-polygalacturonases (designated PehA and PehB) by B. glumae.”
✓ located verbatim in the source · abstract, characters 388–522

Title

Identification, characterization and regulation of two secreted polygalacturonases of the emerging rice pathogen Burkholderia glumae

Giuliano Degrassi; Giulia Devescovi; Jinwoo Kim; et al. FEMS Microbiology Ecology 2008. doi:10.1111/j.1574-6941.2008.00516.x

Other claims from this paper (3)

Method / resource The two polygalacturonases were purified to homogeneity.
Observation The genetic determinants of the two polygalacturonases were identified and characterized.
Intervention effect Inactivation of either polygalacturonase gene left B. glumae rice virulence comparable to its wild-type parent.

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

The two polygalacturonases were purified to homogeneity.

Taxon: B. glumaeBurkholderia glumaee1
Gene: PehA and PehBe1
Outcome: purified to homogeneitye0

Not reportedComparator

Verbatim

e0
“The two enzymes were purified to homogeneity and the corresponding genetic determinants were identified and characterized.”
✓ located verbatim in the source · abstract, characters 523–645

e1
“This study reports the production and secretion of two highly similar endo-polygalacturonases (designated PehA and PehB) by B. glumae.”
✓ located verbatim in the source · abstract, characters 388–522

Title

Identification, characterization and regulation of two secreted polygalacturonases of the emerging rice pathogen Burkholderia glumae

Giuliano Degrassi; Giulia Devescovi; Jinwoo Kim; et al. FEMS Microbiology Ecology 2008. doi:10.1111/j.1574-6941.2008.00516.x

Other claims from this paper (3)

Observationobservedoriginal resultmeasured

Claim · model-written summary

The genetic determinants of the two polygalacturonases were identified and characterized.

Taxon: B. glumaeBurkholderia glumaee1
Gene: PehA and PehBe1
Outcome: genetic determinants were identified and characterizede0

Verbatim

e0
“The two enzymes were purified to homogeneity and the corresponding genetic determinants were identified and characterized.”
✓ located verbatim in the source · abstract, characters 523–645

e1
“This study reports the production and secretion of two highly similar endo-polygalacturonases (designated PehA and PehB) by B. glumae.”
✓ located verbatim in the source · abstract, characters 388–522

Title

Identification, characterization and regulation of two secreted polygalacturonases of the emerging rice pathogen Burkholderia glumae

Giuliano Degrassi; Giulia Devescovi; Jinwoo Kim; et al. FEMS Microbiology Ecology 2008. doi:10.1111/j.1574-6941.2008.00516.x

Other claims from this paper (3)

Observation B. glumae produces and secretes two highly similar endo-polygalacturonases, PehA and PehB.
Method / resource The two polygalacturonases were purified to homogeneity.
Intervention effect Inactivation of either polygalacturonase gene left B. glumae rice virulence comparable to its wild-type parent.

Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Inactivation of either polygalacturonase gene left B. glumae rice virulence comparable to its wild-type parent.

Taxon: B. glumaeBurkholderia glumaee0
Treatment: either polygalacturonase gene was inactivatede0
Interactor: riceOryza sativae0host
Outcome: rice virulencee0
Direction: comparablee0
Comparator: wild-type parent straine0

Verbatim

e0
“When either polygalacturonase gene was inactivated, B. glumae retained rice virulence comparable to that of the wild-type parent strain.”
✓ located verbatim in the source · abstract, characters 646–782

Title

Identification, characterization and regulation of two secreted polygalacturonases of the emerging rice pathogen Burkholderia glumae

Giuliano Degrassi; Giulia Devescovi; Jinwoo Kim; et al. FEMS Microbiology Ecology 2008. doi:10.1111/j.1574-6941.2008.00516.x

Other claims from this paper (3)

Observation B. glumae produces and secretes two highly similar endo-polygalacturonases, PehA and PehB.
Method / resource The two polygalacturonases were purified to homogeneity.
Observation The genetic determinants of the two polygalacturonases were identified and characterized.

Burkholderia glumae 8 claims

8 claims